Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 8.8e-89 330.1 150 100.0
BolC2t09640H Brassica oleracea HOM05D011693 ORTHO05D040107 4.2e-38 161.8 78 93.6
A02p22580 Brassica napus HOM05D011693 ORTHO05D017562 5.8e-24 114.8 148 43.2
BraA02t07262Z Brassica rapa HOM05D011693 ORTHO05D017562 5.8e-24 114.8 148 43.2
C02p36240 Brassica napus HOM05D011693 ORTHO05D017562 7.6e-24 114.4 148 43.9
BolC2t09637H Brassica oleracea HOM05D011693 ORTHO05D017562 7.6e-24 114.4 148 43.9
BolC2t09634H Brassica oleracea HOM05D011693 ORTHO05D017562 2.3e-20 102.8 150 38.0
A02p22560 Brassica napus HOM05D011693 ORTHO05D017562 3.0e-20 102.4 147 39.5
BraA02t07261Z Brassica rapa HOM05D011693 ORTHO05D017562 3.0e-20 102.4 147 39.5
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 5.1e-20 101.7 144 36.8
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 6.7e-20 101.3 146 37.0
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 6.7e-20 101.3 146 37.0
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 1.1e-19 100.5 146 35.6
A02p22610 Brassica napus HOM05D011693 ORTHO05D023959 1.9e-19 99.8 153 38.6
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 2.5e-19 99.4 146 37.0
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 2.5e-19 99.4 146 37.0
C02p36200 Brassica napus HOM05D011693 ORTHO05D017562 3.3e-19 99.0 147 37.4
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 7.4e-19 97.8 146 37.0
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 3.7e-18 95.5 132 39.4
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 2.4e-17 92.8 141 34.8
BcaB05g25174 Brassica carinata HOM05D011693 ORTHO05D017562 1.3e-15 87.0 148 36.5
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 2.2e-15 86.3 134 33.6
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 8.5e-15 84.3 142 35.2
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 1.1e-14 84.0 134 35.1
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 9.3e-14 80.9 146 30.8
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 2.7e-13 79.3 142 33.8
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.7e-13 79.3 143 36.4
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 3.6e-13 79.0 145 34.5
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 4.6e-13 78.6 146 33.6
AL3G46890 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 6.1e-13 78.2 153 31.4
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 6.1e-13 78.2 144 34.0
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 2.3e-12 76.3 142 35.2
BolC2t09638H Brassica oleracea HOM05D011693 ORTHO05D023959 3.0e-12 75.9 85 40.0
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 3.0e-12 75.9 142 33.8
BcaC08g45375 Brassica carinata HOM05D004904 ORTHO05D012610 3.9e-12 75.5 115 33.9
C02p36250 Brassica napus HOM05D011693 ORTHO05D023959 3.9e-12 75.5 85 40.0
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 5.1e-12 75.1 143 35.0
BraA02t07264Z Brassica rapa HOM05D011693 ORTHO05D023959 1.1e-11 73.9 86 40.7
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 1.9e-11 73.2 143 33.6
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 1.9e-11 73.2 142 32.4
Thhalv10002784m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 3.3e-11 72.4 145 33.1
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 4.3e-11 72.0 165 30.9
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 4.3e-11 72.0 165 30.9
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 4.3e-11 72.0 165 30.9
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 4.3e-11 72.0 165 30.9
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 5.7e-11 71.6 130 33.1
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 9.7e-11 70.9 143 33.6
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 9.7e-11 70.9 143 33.6
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 1.3e-10 70.5 137 31.4
Carub.0002s1683 Capsella rubella HOM05D004904 ORTHO05D012993 1.3e-10 70.5 143 28.7
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.8e-10 69.3 141 29.1
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.8e-10 69.3 142 28.2
Thhalv10000458m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.4e-09 67.0 145 33.1
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 1.8e-09 66.6 146 32.9
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 1.8e-09 66.6 146 32.9
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.8e-09 66.6 146 31.5
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 4.1e-09 65.5 160 30.0
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 5.3e-09 65.1 130 30.8
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 5.3e-09 65.1 145 31.0
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 5.3e-09 65.1 145 31.7
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.3e-09 65.1 141 29.8
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 6.9e-09 64.7 146 32.2
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 6.9e-09 64.7 146 32.9
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 6.9e-09 64.7 146 32.9
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 9.1e-09 64.3 146 32.9
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 9.1e-09 64.3 146 32.9
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 1.2e-08 63.9 146 32.9
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 1.5e-08 63.5 144 28.5
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 2.0e-08 63.2 146 29.5
AL2G29420 Arabidopsis lyrata HOM05D004904 ORTHO05D012993 4.5e-08 62.0 146 28.1
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 5.9e-08 61.6 142 31.0
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 5.9e-08 61.6 147 29.9
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 5.9e-08 61.6 147 29.9
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 5.9e-08 61.6 144 31.9
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 7.7e-08 61.2 147 29.3
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 7.7e-08 61.2 147 29.3
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 1.7e-07 60.1 149 32.9
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 2.2e-07 59.7 138 31.9
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 2.9e-07 59.3 143 28.7
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 3.8e-07 58.9 136 29.4
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 5.0e-07 58.5 145 30.3
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 6.5e-07 58.2 130 32.3
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 8.5e-07 57.8 131 29.8
C07p62020 Brassica napus HOM05D004904 ORTHO05D012458 1.4e-06 57.0 145 31.7
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 1.4e-06 57.0 144 27.8
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.4e-06 57.0 144 27.8
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.9e-06 56.6 144 29.2
A03p36000 Brassica napus HOM05D020264 ORTHO05D033075 3.2e-06 55.8 142 27.5
BraA03t12772Z Brassica rapa HOM05D020264 ORTHO05D033075 3.2e-06 55.8 142 27.5
C07p61990 Brassica napus HOM05D004904 ORTHO05D027820 4.2e-06 55.5 152 30.3
C07p62000 Brassica napus HOM05D004904 ORTHO05D027820 4.2e-06 55.5 152 30.3
BolC7t46619H Brassica oleracea HOM05D004904 ORTHO05D027820 4.2e-06 55.5 152 30.3


User provided reference genes

Program Settings