Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p22560 Brassica napus HOM05D011693 ORTHO05D017562 2.9e-84 315.1 146 100.0
BraA02t07261Z Brassica rapa HOM05D011693 ORTHO05D017562 2.9e-84 315.1 146 100.0
C02p36200 Brassica napus HOM05D011693 ORTHO05D017562 2.4e-78 295.4 146 93.8
BolC2t09634H Brassica oleracea HOM05D011693 ORTHO05D017562 9.9e-77 290.0 144 91.7
C02p36240 Brassica napus HOM05D011693 ORTHO05D017562 1.4e-62 243.0 143 78.3
BolC2t09637H Brassica oleracea HOM05D011693 ORTHO05D017562 1.4e-62 243.0 143 78.3
A02p22580 Brassica napus HOM05D011693 ORTHO05D017562 8.4e-60 233.8 143 76.2
BraA02t07262Z Brassica rapa HOM05D011693 ORTHO05D017562 8.4e-60 233.8 143 76.2
BcaB05g25174 Brassica carinata HOM05D011693 ORTHO05D017562 4.8e-39 164.9 143 58.7
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 3.6e-26 122.1 137 49.6
A02p22610 Brassica napus HOM05D011693 ORTHO05D023959 7.4e-24 114.4 134 48.5
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 1.9e-19 99.8 147 39.5
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 4.2e-19 98.6 142 37.3
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 6.1e-18 94.7 147 37.4
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 3.9e-17 92.0 148 35.8
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 8.8e-17 90.9 147 38.8
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.3e-15 87.0 147 35.4
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 2.2e-15 86.3 149 37.6
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 2.2e-15 86.3 149 37.6
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 2.8e-15 85.9 148 36.5
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 2.8e-15 85.9 148 36.5
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 2.8e-15 85.9 147 34.7
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 1.4e-14 83.6 148 35.8
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 5.3e-14 81.6 148 32.4
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 2.0e-13 79.7 152 32.9
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 3.5e-13 79.0 148 35.1
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 3.5e-13 79.0 142 31.7
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 3.5e-13 79.0 142 33.1
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 1.0e-12 77.4 142 31.7
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 1.0e-12 77.4 142 31.7
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.0e-12 77.4 145 33.8
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.3e-12 77.0 142 32.4
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 2.9e-12 75.9 135 33.3
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 3.8e-12 75.5 144 31.9
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 5.0e-12 75.1 146 33.6
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 8.5e-12 74.3 151 32.5
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 1.5e-11 73.6 136 31.6
CARHR112870 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.5e-11 73.6 142 31.7
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 1.9e-11 73.2 146 32.9
AL2G29420 Arabidopsis lyrata HOM05D004904 ORTHO05D012993 4.2e-11 72.0 158 29.7
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 4.2e-11 72.0 145 31.7
AT3G10455 Arabidopsis thaliana HOM05D004904 ORTHO05D021430 9.4e-11 70.9 126 31.7
BolC2t09638H Brassica oleracea HOM05D011693 ORTHO05D023959 1.2e-10 70.5 84 44.0
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 1.6e-10 70.1 134 33.6
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 1.6e-10 70.1 148 31.1
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.6e-10 70.1 144 30.6
C02p36250 Brassica napus HOM05D011693 ORTHO05D023959 2.7e-10 69.3 84 42.9
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 2.7e-10 69.3 143 30.1
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 3.6e-10 68.9 143 28.7
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 3.6e-10 68.9 148 31.8
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 3.6e-10 68.9 148 31.1
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 6.1e-10 68.2 145 32.4
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 8.0e-10 67.8 142 31.0
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 1.0e-09 67.4 146 30.8
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 1.0e-09 67.4 146 30.8
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 1.0e-09 67.4 159 28.9
C07p62020 Brassica napus HOM05D004904 ORTHO05D012458 1.8e-09 66.6 144 32.6
BraA02t07264Z Brassica rapa HOM05D011693 ORTHO05D023959 2.3e-09 66.2 85 44.7
Carub.0002s1683 Capsella rubella HOM05D004904 ORTHO05D012993 2.3e-09 66.2 143 32.9
Thhalv10002784m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 2.3e-09 66.2 146 29.5
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 3.0e-09 65.9 149 30.2
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 4.0e-09 65.5 149 28.9
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 4.0e-09 65.5 143 31.5
Carub.0007s2936 Capsella rubella HOM05D004904 ORTHO05D010762 5.2e-09 65.1 133 33.1
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.2e-09 65.1 149 31.5
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 6.7e-09 64.7 160 28.8
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 6.7e-09 64.7 160 28.8
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 8.8e-09 64.3 152 30.3
BcaC08g45375 Brassica carinata HOM05D004904 ORTHO05D012610 1.2e-08 63.9 115 35.7
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 1.2e-08 63.9 160 28.8
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 1.2e-08 63.9 160 28.8
BcaC08g44379 Brassica carinata HOM05D003012 ORTHO05D002833 3.3e-08 62.4 134 29.9
C06p18130 Brassica napus HOM05D003012 ORTHO05D002833 3.3e-08 62.4 134 29.9
BolC6t37021H Brassica oleracea HOM05D003012 ORTHO05D002833 3.3e-08 62.4 134 29.9
BraA07t29670Z Brassica rapa HOM05D003012 ORTHO05D002833 3.3e-08 62.4 134 29.9
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 4.4e-08 62.0 134 29.1
A07p19700 Brassica napus HOM05D003012 ORTHO05D002833 5.7e-08 61.6 134 30.6
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 5.7e-08 61.6 155 31.0
Thhalv10000458m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 5.7e-08 61.6 146 30.8
Thhalv10009624m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 5.7e-08 61.6 143 28.0
Thhalv10023818m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.3e-07 60.5 113 36.3
AT1G51230 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 2.8e-07 59.3 132 31.8
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 4.8e-07 58.5 147 29.3
AL4G12990 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 6.3e-07 58.2 136 29.4
Thhalv10023169m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.2e-07 57.8 141 28.4
Thhalv10014983m.g Eutrema salsugineum HOM05D004904 ORTHO05D012993 1.1e-06 57.4 157 26.8
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.4e-06 57.0 133 31.6
BolC8t51971H Brassica oleracea HOM05D004904 ORTHO05D012458 1.8e-06 56.6 135 29.6
Thhalv10028054m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 5.3e-06 55.1 136 28.7
AT5G38440 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 9.1e-06 54.3 138 29.0


User provided reference genes

Program Settings