Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p20960 Brassica napus HOM05D003545 ORTHO05D031779 4.9e-148 527.7 256 100.0
BraA09t40662Z Brassica rapa HOM05D003545 ORTHO05D004720 2.4e-62 243.0 186 68.3
BcaC03g16226 Brassica carinata HOM05D003545 ORTHO05D011382 3.3e-59 232.6 166 72.9
BcaB02g08203 Brassica carinata HOM05D003545 ORTHO05D004720 2.1e-58 229.9 170 70.6
BolC6t37813H Brassica oleracea HOM05D003545 ORTHO05D004720 6.2e-58 228.4 176 68.2
BcaB02g07435 Brassica carinata HOM05D003545 ORTHO05D004720 8.1e-58 228.0 177 67.2
BraA07t30135Z Brassica rapa HOM05D003545 ORTHO05D004720 1.4e-57 227.3 176 67.6
A07p24930 Brassica napus HOM05D003545 ORTHO05D004720 1.8e-57 226.9 176 67.6
A09p52330 Brassica napus HOM05D003545 ORTHO05D004720 1.8e-57 226.9 176 67.6
BcaC08g45018 Brassica carinata HOM05D003545 ORTHO05D004720 2.4e-57 226.5 175 68.0
C06p26500 Brassica napus HOM05D003545 ORTHO05D004720 2.4e-57 226.5 175 68.0
A04p01940 Brassica napus HOM05D003545 ORTHO05D004720 1.5e-56 223.8 176 65.9
BraA04t15918Z Brassica rapa HOM05D003545 ORTHO05D004720 1.5e-56 223.8 176 65.9
BcaC07g40404 Brassica carinata HOM05D003545 ORTHO05D004720 2.6e-56 223.0 174 67.2
C08p34990 Brassica napus HOM05D003545 ORTHO05D004720 2.6e-56 223.0 174 67.2
Carub.0005s2672 Capsella rubella HOM05D003545 ORTHO05D004720 2.6e-56 223.0 168 68.5
Sp5g03190 Schrenkiella parvula HOM05D003545 ORTHO05D004720 2.6e-56 223.0 168 68.5
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 7.6e-56 221.5 168 68.5
BolC8t51103H Brassica oleracea HOM05D003545 ORTHO05D004720 7.6e-56 221.5 174 66.7
Manes.01G007800 Manihot esculenta HOM05D003545 ORTHO05D004720 7.6e-56 221.5 181 63.0
COL.COLO4_20004 Corchorus olitorius HOM05D003545 ORTHO05D004720 1.3e-55 220.7 210 56.7
Nn1g09395 Nelumbo nucifera HOM05D003545 ORTHO05D004720 1.3e-55 220.7 181 63.0
CARHR170310 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.7e-55 220.3 168 68.5
THA.LOC104804455 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 1.7e-55 220.3 168 67.3
GSVIVG01027489001 Vitis vinifera HOM05D003545 ORTHO05D004720 1.7e-55 220.3 181 63.0
Gorai.007G172000 Gossypium raimondii HOM05D003545 ORTHO05D004720 2.2e-55 219.9 181 63.5
Thhalv10005983m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 2.9e-55 219.5 161 70.2
SalBow3G0142 Salvia bowleyana HOM05D003545 ORTHO05D004720 2.9e-55 219.5 169 66.3
AT3G59990 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 3.8e-55 219.2 168 67.3
Sopen01g002780 Solanum pennellii HOM05D003545 ORTHO05D004720 3.8e-55 219.2 182 62.6
AL5G42170 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 4.9e-55 218.8 168 67.3
BcaC08g45078 Brassica carinata HOM05D003545 ORTHO05D004720 4.9e-55 218.8 192 60.4
C06p26870 Brassica napus HOM05D003545 ORTHO05D004720 4.9e-55 218.8 192 60.4
BolC6t37861H Brassica oleracea HOM05D003545 ORTHO05D004720 4.9e-55 218.8 192 60.4
ClCG05G010600 Citrullus lanatus HOM05D003545 ORTHO05D004720 6.4e-55 218.4 162 67.9
Ciclev10020270m.g Citrus clementina HOM05D003545 ORTHO05D004720 8.4e-55 218.0 168 66.7
Cpa.g.sc9.232 Carica papaya HOM05D003545 ORTHO05D004720 1.1e-54 217.6 181 60.8
BcaC01g05183 Brassica carinata HOM05D003545 ORTHO05D004720 1.4e-54 217.2 176 63.1
C03p29450 Brassica napus HOM05D003545 ORTHO05D004720 1.4e-54 217.2 176 63.1
CSS0015354 Camellia sinensis var. sinensis HOM05D003545 ORTHO05D004720 1.4e-54 217.2 181 61.3
Cc03_g16260 Coffea canephora HOM05D003545 ORTHO05D004720 1.4e-54 217.2 180 62.2
Gohir.D11G161700 Gossypium hirsutum HOM05D003545 ORTHO05D004720 1.4e-54 217.2 181 63.0
Sp4g26260 Schrenkiella parvula HOM05D003545 ORTHO05D004720 1.4e-54 217.2 181 61.9
Hund22664 Selenicereus undatus HOM05D003545 ORTHO05D004720 1.4e-54 217.2 180 62.2
BolC3t15293H Brassica oleracea HOM05D003545 ORTHO05D004720 1.9e-54 216.9 176 63.1
AUR62023680 Chenopodium quinoa HOM05D003545 ORTHO05D004720 1.9e-54 216.9 188 61.2
Lj6g0020499 Lotus japonicus HOM05D003545 ORTHO05D004720 1.9e-54 216.9 181 60.8
Rhsim09G0000700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.9e-54 216.9 196 57.1
CsaV3_3G017890 Cucumis sativus L. HOM05D003545 ORTHO05D004720 2.4e-54 216.5 168 64.3
Potri.004G084800 Populus trichocarpa HOM05D003545 ORTHO05D004720 2.4e-54 216.5 181 62.4
Sed0011009 Sechium edule HOM05D003545 ORTHO05D004720 2.4e-54 216.5 168 64.9
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.2e-54 216.1 176 62.5
AUR62002514 Chenopodium quinoa HOM05D003545 ORTHO05D004720 3.2e-54 216.1 188 61.2
arahy.Tifrunner.gnm1.ann1.J1JEGY Arachis hypogaea HOM05D003545 ORTHO05D004720 4.2e-54 215.7 181 60.8
Haze_01811 Corylus avellana HOM05D003545 ORTHO05D004720 4.2e-54 215.7 181 60.8
HanXRQChr12g0379661 Helianthus annuus HOM05D003545 ORTHO05D004720 4.2e-54 215.7 181 61.3
Potri.017G133200 Populus trichocarpa HOM05D003545 ORTHO05D004720 4.2e-54 215.7 181 62.4
QL02p099802 Quercus lobata HOM05D003545 ORTHO05D004720 5.4e-54 215.3 168 64.9
QL02p099813 Quercus lobata HOM05D003545 ORTHO05D004720 5.4e-54 215.3 168 64.9
arahy.Tifrunner.gnm1.ann1.UV5XRQ Arachis hypogaea HOM05D003545 ORTHO05D004720 7.1e-54 214.9 181 60.8
MELO3C020334.2 Cucumis melo HOM05D003545 ORTHO05D004720 7.1e-54 214.9 168 63.7
Glyma.19G001700 Glycine max HOM05D003545 ORTHO05D004720 7.1e-54 214.9 181 59.7
Gohir.A11G154800 Gossypium hirsutum HOM05D003545 ORTHO05D004720 7.1e-54 214.9 181 62.4
PGR042G1967 Punica granatum HOM05D003545 ORTHO05D004720 7.1e-54 214.9 167 65.3
VMungo1080G0943 Vigna mungo HOM05D003545 ORTHO05D004720 7.1e-54 214.9 181 60.2
CAN.G911.7 Capsicum annuum HOM05D003545 ORTHO05D004720 9.2e-54 214.5 179 62.0
Duzib138G0328 Durio zibethinus HOM05D003545 ORTHO05D004720 9.2e-54 214.5 181 61.9
Eucgr.E00006 Eucalyptus grandis HOM05D003545 ORTHO05D004720 9.2e-54 214.5 181 60.2
Glyma.05G001900 Glycine max HOM05D003545 ORTHO05D004720 9.2e-54 214.5 181 59.7
Lj1A1040G36 Lonicera japonica HOM05D003545 ORTHO05D004720 9.2e-54 214.5 175 62.3
Sabra04G0056000 Salix brachista HOM05D003545 ORTHO05D004720 9.2e-54 214.5 181 61.3
Carub.0004s2675 Capsella rubella HOM05D003545 ORTHO05D004720 1.2e-53 214.2 168 64.3
Sed0004430 Sechium edule HOM05D003545 ORTHO05D004720 1.2e-53 214.2 168 64.9
SGA_v2.0_scaffold334G49082 Striga asiatica HOM05D003545 ORTHO05D004720 1.2e-53 214.2 168 64.3
Aqoxy5G02072 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 1.6e-53 213.8 181 61.3
Dinv14603 Davidia involucrata HOM05D003545 ORTHO05D004720 1.6e-53 213.8 181 59.7
Migut.N01930 Erythranthe guttata HOM05D003545 ORTHO05D004720 1.6e-53 213.8 168 65.5
Thhalv10001459m.g Eutrema salsugineum HOM05D003545 ORTHO05D004720 1.6e-53 213.8 171 63.7
Rhsim09G0038700 Rhododendron simsii HOM05D003545 ORTHO05D004720 1.6e-53 213.8 187 57.8
Atru.chr11.677 Acer truncatum HOM05D003545 ORTHO05D004720 2.1e-53 213.4 168 64.3
A03p24710 Brassica napus HOM05D003545 ORTHO05D004720 2.1e-53 213.4 176 61.9
CiPaw.05G050600 Carya illinoinensis HOM05D003545 ORTHO05D004720 2.1e-53 213.4 181 60.8
Cc03_g16230 Coffea canephora HOM05D003545 ORTHO05D004720 2.1e-53 213.4 167 64.7
MSTRG.24538 Avicennia marina HOM05D003545 ORTHO05D004720 2.7e-53 213.0 166 65.1
EL10Ac3g06198 Beta vulgaris HOM05D003545 ORTHO05D004720 2.7e-53 213.0 181 60.8
Nitab4.5_0002417g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 2.7e-53 213.0 179 62.0
SGA_v2.0_scaffold286G47136 Striga asiatica HOM05D003545 ORTHO05D004720 2.7e-53 213.0 168 64.3
Zm00001eb173260 Zea mays HOM05D003545 ORTHO05D004720 3.5e-53 212.6 168 64.9
Oeu050295.1 Olea europaea HOM05D003545 ORTHO05D004720 4.6e-53 212.2 180 61.1
Aa31LG1G25840 Aethionema arabicum HOM05D003545 ORTHO05D004720 6.0e-53 211.8 181 60.8
AT2G44180 Arabidopsis thaliana HOM05D003545 ORTHO05D004720 6.0e-53 211.8 168 63.1
PGSC0003DMG400021374 Solanum tuberosum HOM05D003545 ORTHO05D004720 6.0e-53 211.8 179 61.5
TAR636G2827 Trochodendron aralioides HOM05D003545 ORTHO05D004720 6.0e-53 211.8 184 58.2
CANSAT64G0507 Cannabis sativa HOM05D003545 ORTHO05D004720 7.8e-53 211.5 180 60.0
Eucgr.H00238 Eucalyptus grandis HOM05D003545 ORTHO05D004720 7.8e-53 211.5 186 58.6
Lsat_1_v5_gn_5_37781 Lactuca sativa HOM05D003545 ORTHO05D004720 7.8e-53 211.5 181 60.2
MD17G1285400 Malus domestica HOM05D003545 ORTHO05D004720 7.8e-53 211.5 180 60.0
Duzib133G1379 Durio zibethinus HOM05D003545 ORTHO05D004720 1.0e-52 211.1 181 60.2
Nitab4.5_0011686g0010 Nicotiana tabacum HOM05D003545 ORTHO05D004720 1.0e-52 211.1 179 61.5
Psat6g212640 Pisum sativum HOM05D003545 ORTHO05D004720 1.0e-52 211.1 181 59.7
PSO782G1687 Papaver somniferum HOM05D003545 ORTHO05D004720 1.7e-52 210.3 168 63.7
ATR0594G119 Amborella trichopoda HOM05D003545 ORTHO05D004720 2.3e-52 209.9 181 60.2
Thecc.01G176200 Theobroma cacao HOM05D003545 ORTHO05D004720 2.3e-52 209.9 181 60.2
Aqoxy5G02074 Aquilegia oxysepala HOM05D003545 ORTHO05D004720 3.0e-52 209.5 181 60.2
ECA246G2273 Erigeron canadensis HOM05D003545 ORTHO05D004720 3.0e-52 209.5 180 60.0
TWI75G0601 Tripterygium wilfordii HOM05D003545 ORTHO05D004720 3.0e-52 209.5 181 59.1
Peaxi162Scf00184g00109 Petunia axillaris HOM05D003545 ORTHO05D004720 5.1e-52 208.8 166 63.9
PSO063G3599 Papaver somniferum HOM05D003545 ORTHO05D004720 6.6e-52 208.4 168 62.5
DCAR_005465 Daucus carota HOM05D003545 ORTHO05D004720 8.7e-52 208.0 167 64.1
Sc10g0003580 Simmondsia chinensis HOM05D003545 ORTHO05D004720 8.7e-52 208.0 168 61.9
CiPaw.06G144300 Carya illinoinensis HOM05D003545 ORTHO05D004720 1.1e-51 207.6 181 60.2
Os12g0628500 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 1.5e-51 207.2 181 58.6
Ca_11016_v3 Cicer arietinum L. HOM05D003545 ORTHO05D004720 1.9e-51 206.8 181 56.9
Medtr1g105940 Medicago truncatula HOM05D003545 ORTHO05D004720 1.9e-51 206.8 181 58.6
Medtr4g109100 Medicago truncatula HOM05D003545 ORTHO05D004720 1.9e-51 206.8 181 58.6
QL02p098432 Quercus lobata HOM05D003545 ORTHO05D004720 3.3e-51 206.1 182 59.3
Lalb_Chr24g0392661 Lupinus albus HOM05D003545 ORTHO05D004720 4.3e-51 205.7 181 57.5
TPR.G21147 Trifolium pratense HOM05D003545 ORTHO05D004720 5.6e-51 205.3 181 58.0
Prupe.2G330300 Prunus persica HOM05D003545 ORTHO05D004720 7.3e-51 204.9 167 61.7
BcaC01g05074 Brassica carinata HOM05D003545 ORTHO05D004720 9.6e-51 204.5 165 66.1
SMO340G0246 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 9.6e-51 204.5 188 56.9
CARHR139340 Cardamine hirsuta HOM05D003545 ORTHO05D004720 1.2e-50 204.1 168 60.7
SMO230G0032 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 2.8e-50 203.0 188 56.4
RcHm_v2.0_Chr1g0328111 Rosa chinensis HOM05D003545 ORTHO05D004720 3.6e-50 202.6 160 63.1
Os08g0542000 Oryza sativa ssp. japonica HOM05D003545 ORTHO05D004720 4.7e-50 202.2 168 61.3
SEGI_07894 Sequoiadendron giganteum HOM05D003545 ORTHO05D004720 4.7e-50 202.2 168 61.3
MSTRG.22061 Avicennia marina HOM05D003545 ORTHO05D004720 6.2e-50 201.8 166 62.0
C04p32790 Brassica napus HOM05D003545 ORTHO05D004720 6.2e-50 201.8 186 60.8
CDE07G0638 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 6.2e-50 201.8 181 58.0
RcHm_v2.0_Chr1g0328121 Rosa chinensis HOM05D003545 ORTHO05D004720 8.1e-50 201.4 176 58.0
Pp3c18_2370 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.1e-49 201.1 168 59.5
Pp3c18_2250 Physcomitrium patens HOM05D003545 ORTHO05D004720 1.4e-49 200.7 168 59.5
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 2.4e-49 199.9 163 60.7
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.4e-49 199.9 163 60.7
Mapoly0009s0208 Marchantia polymorpha HOM05D003545 ORTHO05D004720 3.1e-49 199.5 180 57.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.9e-49 198.4 176 57.4
AagrBONN_evm.TU.Sc2ySwM_362.208 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.5e-48 197.2 181 56.9
FvH4_5g31110 Fragaria vesca HOM05D003545 ORTHO05D004720 1.5e-48 197.2 163 60.1
FAN13G2420 Fragaria x ananassa HOM05D003545 ORTHO05D004720 3.4e-48 196.1 163 59.5
SMO367G0222 Selaginella moellendorffii HOM05D003545 ORTHO05D004720 3.4e-48 196.1 188 55.9
BcaC05g29263 Brassica carinata HOM05D003545 ORTHO05D024095 1.7e-47 193.7 189 57.7
CDE04G0368 Ceratophyllum demersum HOM05D003545 ORTHO05D004720 3.8e-47 192.6 169 59.2
Mapoly0009s0058 Marchantia polymorpha HOM05D003545 ORTHO05D004720 3.8e-47 192.6 180 56.1
BcaC02g10099 Brassica carinata HOM05D003545 ORTHO05D004720 6.4e-47 191.8 172 61.6
BolC4t24842H Brassica oleracea HOM05D003545 ORTHO05D004720 6.4e-47 191.8 172 61.6
Eucgr.E04344 Eucalyptus grandis HOM05D003545 ORTHO05D004720 5.4e-46 188.7 205 51.2
MBI03_g28950_MAGBIO Magnolia biondii HOM05D003545 ORTHO05D004720 1.3e-44 184.1 205 48.8
C09p36080 Brassica napus HOM05D003545 ORTHO05D024095 9.6e-43 177.9 190 55.3
C01p23170 Brassica napus HOM05D001404 ORTHO05D004720 1.3e-42 177.6 188 55.3
CBR_g52643 Chara braunii HOM05D003545 ORTHO05D004720 2.1e-42 176.8 176 52.8
Rhsim09G0038900 Rhododendron simsii HOM05D009719 ORTHO05D003904 6.2e-42 175.3 230 44.3
C03p30540 Brassica napus HOM05D003545 ORTHO05D031779 1.4e-41 174.1 169 59.8
vmacro00738 Vaccinium macrocarpon HOM05D003545 ORTHO05D004720 1.4e-38 164.1 154 55.8
PRCOL_00002364 Prasinoderma coloniale HOM05D003545 ORTHO05D004720 2.4e-38 163.3 161 52.2
MCO01G510 Micromonas commoda HOM05D003545 ORTHO05D004720 4.2e-38 162.5 167 49.7
Cre16.g652100 Chlamydomonas reinhardtii HOM05D003545 ORTHO05D004720 4.6e-37 159.1 174 48.3
BolC2t10031H Brassica oleracea HOM05D003545 ORTHO05D011382 1.5e-35 154.1 134 62.7
BolC5t31394H Brassica oleracea HOM05D003545 ORTHO05D024095 1.3e-34 151.0 180 52.8
RcHm_v2.0_Chr1g0332011 Rosa chinensis HOM05D003545 ORTHO05D004720 8.1e-34 148.3 91 76.9
BcaC07g40535 Brassica carinata HOM05D003545 ORTHO05D004720 6.9e-33 145.2 174 48.3
C02p40050 Brassica napus HOM05D003545 ORTHO05D011382 6.9e-33 145.2 134 59.7
BraA03t11677Z Brassica rapa HOM05D003545 ORTHO05D004720 5.8e-32 142.1 134 56.0
THA.LOC104802530 Tarenaya hassleriana HOM05D003545 ORTHO05D004720 7.6e-32 141.7 126 58.7
BcaC04g21066 Brassica carinata HOM05D000458 ORTHO05D000951 9.6e-27 124.8 172 47.7
BcaB01g03221 Brassica carinata HOM05D003545 ORTHO05D031779 2.4e-25 120.2 85 71.8
HPP92_003411 Vanilla planifolia HOM05D003545 ORTHO05D004720 5.3e-25 119.0 132 47.7
RcHm_v2.0_Chr2g0090851 Rosa chinensis HOM05D003545 ORTHO05D011382 6.9e-25 118.6 66 84.8
Haze_26740 Corylus avellana HOM05D003545 ORTHO05D004720 4.6e-21 105.9 168 36.9
AL1G53080 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 7.9e-21 105.1 64 75.0
BolC9t56447H Brassica oleracea HOM05D003545 ORTHO05D024095 1.6e-18 97.4 153 44.4
Solyc01g006800.4 Solanum lycopersicum HOM05D003545 ORTHO05D004720 4.5e-16 89.4 106 47.2
C01p52430 Brassica napus HOM05D003545 ORTHO05D024095 6.5e-15 85.5 108 50.9
unitig_747.g21724 Utricularia gibba HOM05D003545 ORTHO05D004720 2.3e-12 77.0 181 29.8
AagrBONN_evm.TU.Sc2ySwM_362.217 Anthoceros agrestis HOM05D003545 ORTHO05D004720 1.4e-09 67.8 93 43.0
AL4G43130 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 3.1e-09 66.6 44 65.9
BcaB05g24664 Brassica carinata HOM05D003797 ORTHO05D004370 8.5e-07 58.5 68 48.5
BcaC06g34473 Brassica carinata HOM05D003545 ORTHO05D032500 1.9e-06 57.4 30 80.0
BolC7t43342H Brassica oleracea HOM05D003545 ORTHO05D032500 1.9e-06 57.4 30 80.0


User provided reference genes

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