Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 1.4e-268 929.1 480 100.0
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 6.0e-240 833.9 474 91.8
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 5.1e-239 830.9 474 91.6
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 2.7e-232 808.5 487 87.7
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 3.5e-232 808.1 489 87.7
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 4.6e-232 807.7 487 87.5
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 2.3e-231 805.4 484 87.8
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 5.1e-231 804.3 484 87.8
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 5.1e-231 804.3 484 87.8
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 2.5e-230 802.0 453 90.5
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 4.3e-230 801.2 485 87.0
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 5.7e-230 800.8 453 90.7
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.6e-229 799.3 453 90.1
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 8.2e-229 797.0 481 87.1
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 6.9e-228 793.9 453 89.8
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 2.6e-214 748.8 481 81.5
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 9.7e-206 720.3 487 78.6
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 2.2e-205 719.2 453 82.6
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 1.8e-204 716.1 489 78.7
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 5.3e-204 714.5 490 78.4
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.2e-203 713.4 443 83.1
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 6.5e-202 707.6 443 82.4
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 1.3e-189 666.8 477 74.8
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 2.7e-187 659.1 480 73.1
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.3e-186 656.8 446 76.5
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 1.2e-184 650.2 482 71.6
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 2.1e-184 649.4 489 72.4
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.8e-184 649.0 413 81.4
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 4.7e-184 648.3 492 70.9
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 8.0e-184 647.5 445 76.9
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 8.9e-183 644.0 444 76.1
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 2.8e-181 639.0 481 70.5
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 1.1e-180 637.1 490 70.6
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 4.1e-180 635.2 439 76.1
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 5.4e-180 634.8 481 71.7
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 1.2e-179 633.6 475 71.6
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 1.6e-179 633.3 484 71.1
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.0e-179 632.9 439 75.9
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 5.0e-178 628.2 432 75.5
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 1.1e-177 627.1 487 70.0
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 3.3e-177 625.5 490 69.4
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 3.3e-177 625.5 489 69.9
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 5.6e-177 624.8 489 70.1
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 8.0e-176 620.9 483 70.6
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 1.4e-175 620.2 460 72.4
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.5e-174 616.7 477 69.6
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 2.6e-174 615.9 445 73.7
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 3.4e-174 615.5 485 69.1
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 4.4e-174 615.1 483 68.9
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 7.5e-174 614.4 483 69.2
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 9.8e-174 614.0 477 68.8
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 1.7e-173 613.2 486 67.1
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 2.2e-173 612.8 490 68.8
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.7e-173 612.1 489 66.7
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 3.7e-173 612.1 476 69.1
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 4.9e-173 611.7 467 69.6
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 6.4e-173 611.3 519 66.3
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 1.9e-172 609.8 486 67.7
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 2.4e-172 609.4 485 68.0
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 4.1e-172 608.6 451 70.3
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.7e-170 603.2 536 63.6
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.7e-170 603.2 536 63.6
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.3e-170 602.8 536 63.6
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 3.0e-170 602.4 539 63.3
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 3.9e-170 602.1 485 68.0
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 1.5e-169 600.1 472 67.8
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 1.9e-169 599.7 485 67.2
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 4.3e-169 598.6 491 65.4
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 9.5e-169 597.4 427 74.2
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 9.5e-169 597.4 477 66.2
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.6e-168 596.7 443 69.8
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 1.6e-168 596.7 477 66.2
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 2.8e-168 595.9 493 66.7
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 2.8e-168 595.9 478 68.0
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 3.6e-168 595.5 495 66.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 6.2e-168 594.7 480 67.9
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 8.0e-168 594.3 573 60.2
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 1.2e-166 590.5 492 66.1
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 1.2e-166 590.5 491 66.2
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 1.5e-166 590.1 490 66.9
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 2.0e-166 589.7 483 65.8
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 2.6e-166 589.3 420 73.6
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 1.3e-165 587.0 470 67.7
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 1.4e-164 583.6 492 65.7
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 4.1e-164 582.0 498 64.9
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 7.1e-164 581.3 478 65.5
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 7.1e-164 581.3 508 63.4
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 9.2e-164 580.9 452 69.7
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 9.2e-164 580.9 353 82.7
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 1.7e-162 576.6 489 65.6
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 1.9e-161 573.2 485 65.8
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 1.9e-161 573.2 485 65.8
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 3.3e-161 572.4 485 65.6
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 4.3e-161 572.0 475 65.3
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 5.6e-161 571.6 492 64.6
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 9.5e-161 570.9 421 71.3
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 9.5e-161 570.9 470 65.5
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 2.1e-160 569.7 475 66.1
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 6.2e-160 568.2 448 66.7
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 1.1e-159 567.4 477 63.7
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 3.1e-159 565.8 426 68.3
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 2.0e-158 563.1 474 65.4
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 5.8e-158 561.6 478 62.1
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 9.9e-158 560.8 482 63.3
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 8.3e-157 557.8 445 66.7
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 8.3e-157 557.8 445 66.7
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 4.6e-155 552.0 499 62.3
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 6.0e-155 551.6 449 64.4
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 5.6e-153 545.0 485 61.2
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 2.1e-152 543.1 535 58.3
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 1.1e-151 540.8 470 63.0
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 2.4e-151 539.7 505 60.4
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 4.0e-151 538.9 433 63.7
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 1.2e-150 537.3 463 63.1
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 9.9e-150 534.3 441 65.3
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.3e-149 533.9 444 64.0
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 2.9e-149 532.7 428 67.1
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 5.1e-146 521.9 512 56.2
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 9.9e-142 507.7 432 62.5
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 3.2e-140 502.7 614 51.6
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 6.0e-139 498.4 464 60.6
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 6.0e-139 498.4 464 61.0
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 8.1e-136 488.0 424 62.7
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 1.6e-128 463.8 250 95.2
Nitab4.5_0008106g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 2.0e-126 456.8 480 56.0
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 2.1e-123 446.8 454 53.3
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 4.1e-119 432.6 470 51.1
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.5e-118 430.6 474 53.2
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 2.0e-118 430.3 462 54.8
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 1.0e-114 417.9 276 81.2
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 1.9e-113 413.7 299 74.2
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.5e-113 413.3 547 46.8
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 3.7e-112 409.5 517 46.8
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.1e-111 407.9 534 46.8
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 3.0e-98 363.2 449 46.8
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 1.8e-95 354.0 362 54.1
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 1.0e-90 338.2 480 45.6
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.1e-89 334.7 225 76.9
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.6e-81 307.0 352 48.0
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 1.1e-79 301.6 228 68.4
MBI09_g18626_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 7.0e-79 298.9 345 52.2
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 8.0e-75 285.4 194 73.7
Aa31LG7G5260 Aethionema arabicum HOM05D003652 ORTHO05D004190 4.0e-74 283.1 176 84.1
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 1.7e-64 251.1 203 67.5
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 1.3e-61 241.5 179 67.0
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.5e-60 237.3 162 74.1
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.8e-57 226.1 195 63.6
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-50 204.1 341 41.1
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.4e-49 200.3 223 51.1
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 1.9e-44 184.5 156 56.4
COL.COLO4_33551 Corchorus olitorius HOM05D003652 ORTHO05D004190 4.3e-44 183.3 248 50.8
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 5.4e-39 166.4 153 53.6
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 6.8e-34 149.4 103 68.0
Zm00001eb125110 Zea mays HOM05D003652 ORTHO05D004190 2.1e-30 137.9 123 58.5
Zm00001eb179990 Zea mays HOM05D003652 ORTHO05D004190 2.7e-30 137.5 92 69.6
Zm00001eb184190 Zea mays HOM05D003652 ORTHO05D004190 8.7e-29 132.5 99 62.6
Zm00001eb119180 Zea mays HOM05D003652 ORTHO05D004190 2.5e-28 131.0 102 63.7
Zm00001eb092050 Zea mays HOM05D003652 ORTHO05D004190 9.0e-26 122.5 83 71.1
Zm00001eb116630 Zea mays HOM05D003652 ORTHO05D004190 3.4e-25 120.6 86 66.3
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 7.1e-23 112.8 199 32.2
PGSC0003DMG400010789 Solanum tuberosum HOM05D003652 ORTHO05D004190 1.9e-20 104.8 141 50.4
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.8e-17 93.2 96 50.0
Zm00001eb201500 Zea mays HOM05D003652 ORTHO05D004190 1.3e-13 82.0 80 53.8
BraA02t07124Z Brassica rapa HOM05D003652 ORTHO05D004190 9.6e-12 75.9 44 90.9
SEGI_05372 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.1e-11 74.7 100 46.0
Zm00001eb002970 Zea mays HOM05D000488 ORTHO05D004190 3.4e-09 67.4 76 44.7
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 2.5e-07 61.2 105 44.8
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 3.2e-07 60.8 130 32.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-06 57.0 46 65.2


User provided reference genes

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