Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p20600 Brassica napus HOM05D002666 ORTHO05D011316 2.2e-38 161.8 78 100.0
BraA02t07094Z Brassica rapa HOM05D002666 ORTHO05D011316 7.7e-36 153.3 78 96.2
C02p33110 Brassica napus HOM05D002666 ORTHO05D011316 2.2e-35 151.8 78 94.9
BcaC03g15664 Brassica carinata HOM05D002666 ORTHO05D011316 6.5e-35 150.2 78 94.9
BolC2t09385H Brassica oleracea HOM05D002666 ORTHO05D011316 6.5e-35 150.2 78 94.9
BraA09t38385Z Brassica rapa HOM05D002666 ORTHO05D011316 3.2e-34 147.9 78 93.6
BraA02t07090Z Brassica rapa HOM05D002666 ORTHO05D011316 4.7e-33 144.1 79 92.4
C02p33170 Brassica napus HOM05D002666 ORTHO05D011316 8.8e-32 139.8 79 89.9
BcaC03g15663 Brassica carinata HOM05D002666 ORTHO05D011316 1.9e-18 95.5 68 72.1
BolC2t09384H Brassica oleracea HOM05D002666 ORTHO05D011316 1.9e-18 95.5 68 72.1
C02p33140 Brassica napus HOM05D002666 ORTHO05D011316 7.2e-18 93.6 67 70.1
BcaB05g24979 Brassica carinata HOM05D002666 ORTHO05D011316 1.2e-17 92.8 67 67.2
BcaB05g24983 Brassica carinata HOM05D002666 ORTHO05D011316 1.2e-17 92.8 67 67.2
BraA02t07089Z Brassica rapa HOM05D002666 ORTHO05D011316 1.2e-17 92.8 68 70.6
BcaB05g24978 Brassica carinata HOM05D002666 ORTHO05D011316 1.6e-17 92.4 67 71.6
BcaB05g24980 Brassica carinata HOM05D002666 ORTHO05D011316 1.6e-17 92.4 67 71.6
BcaC03g15657 Brassica carinata HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 70.6
BcaC07g40314 Brassica carinata HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
A02p20540 Brassica napus HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
A02p20590 Brassica napus HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
C08p34310 Brassica napus HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
BolC2t09373H Brassica oleracea HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 70.6
BolC8t51029H Brassica oleracea HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
BraA02t07093Z Brassica rapa HOM05D002666 ORTHO05D011316 1.6e-17 92.4 68 69.1
C02p33270 Brassica napus HOM05D002666 ORTHO05D011316 1.4e-16 89.4 68 67.6
BraA02t07086Z Brassica rapa HOM05D002666 ORTHO05D011316 1.4e-16 89.4 68 67.6
BcaB05g24977 Brassica carinata HOM05D002666 ORTHO05D011316 2.6e-15 85.1 67 62.7
Carub.0002s0722 Capsella rubella HOM05D002666 ORTHO05D004769 4.1e-13 77.8 65 55.4
C02p33180 Brassica napus HOM05D002666 ORTHO05D011316 4.6e-12 74.3 68 61.8
Carub.0004s2120 Capsella rubella HOM05D002666 ORTHO05D011316 4.6e-12 74.3 65 55.4
Aa31LG4G17090 Aethionema arabicum HOM05D002666 ORTHO05D004769 5.9e-12 73.9 66 47.0
Aa31LG4G17100 Aethionema arabicum HOM05D002666 ORTHO05D004769 2.9e-11 71.6 61 50.8
Carub.0004s2646 Capsella rubella HOM05D002666 ORTHO05D004769 8.6e-11 70.1 66 51.5
Aa31LG8G17520 Aethionema arabicum HOM05D002666 ORTHO05D004769 9.5e-10 66.6 61 52.5
CARHR111270 Cardamine hirsuta HOM05D002666 ORTHO05D004769 9.5e-10 66.6 61 49.2
AL4G25770 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.2e-09 66.2 61 52.5
AL4G37990 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.2e-09 66.2 61 49.2
Thhalv10000285m.g Eutrema salsugineum HOM05D002666 ORTHO05D004769 1.6e-09 65.9 66 50.0
BcaB01g00108 Brassica carinata HOM05D002666 ORTHO05D004769 3.6e-09 64.7 61 52.5
BcaC03g15649 Brassica carinata HOM05D002666 ORTHO05D011316 3.6e-09 64.7 76 51.3
Carub.0007s2103 Capsella rubella HOM05D002666 ORTHO05D004769 3.6e-09 64.7 66 48.5
CARHR111260 Cardamine hirsuta HOM05D002666 ORTHO05D004769 4.7e-09 64.3 61 47.5
Carub.0004s2249 Capsella rubella HOM05D002666 ORTHO05D004769 6.2e-09 63.9 61 49.2
CARHR135320 Cardamine hirsuta HOM05D002666 ORTHO05D004769 1.4e-08 62.8 61 47.5
AL4G38020 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 1.8e-08 62.4 61 45.9
C02p33130 Brassica napus HOM05D002666 ORTHO05D011316 1.8e-08 62.4 67 52.2
AL8G27040 Arabidopsis lyrata HOM05D002666 ORTHO05D011316 2.3e-08 62.0 62 48.4
A02p20580 Brassica napus HOM05D002666 ORTHO05D011316 2.3e-08 62.0 47 63.8
C04p31880 Brassica napus HOM05D002666 ORTHO05D004769 2.3e-08 62.0 62 51.6
A09p48260 Brassica napus HOM05D002666 ORTHO05D004769 4.0e-08 61.2 61 50.8
BraA09t40279Z Brassica rapa HOM05D002666 ORTHO05D004769 4.0e-08 61.2 61 50.8
CARHR135310 Cardamine hirsuta HOM05D002666 ORTHO05D004769 4.0e-08 61.2 61 45.9
Aa31LG8G14950 Aethionema arabicum HOM05D002666 ORTHO05D004769 5.2e-08 60.8 61 47.5
BcaC07g39854 Brassica carinata HOM05D002666 ORTHO05D004769 5.2e-08 60.8 61 49.2
BolC8t50673H Brassica oleracea HOM05D002666 ORTHO05D004769 5.2e-08 60.8 61 49.2
Sp5g20790 Schrenkiella parvula HOM05D002666 ORTHO05D004769 5.2e-08 60.8 61 49.2
BolC4t28134H Brassica oleracea HOM05D002666 ORTHO05D004769 6.8e-08 60.5 61 47.5
C08p30530 Brassica napus HOM05D002666 ORTHO05D004769 1.2e-07 59.7 61 49.2
BcaC07g39850 Brassica carinata HOM05D002666 ORTHO05D004769 2.0e-07 58.9 61 49.2
A04p29060 Brassica napus HOM05D002666 ORTHO05D004769 2.0e-07 58.9 56 46.4
C08p30560 Brassica napus HOM05D002666 ORTHO05D004769 2.0e-07 58.9 61 49.2
A01p06820 Brassica napus HOM05D002666 ORTHO05D004769 3.4e-07 58.2 64 43.8
C01p07590 Brassica napus HOM05D002666 ORTHO05D004769 3.4e-07 58.2 64 42.2
BolC1t00739H Brassica oleracea HOM05D002666 ORTHO05D004769 3.4e-07 58.2 64 42.2
BraA01t00634Z Brassica rapa HOM05D002666 ORTHO05D004769 3.4e-07 58.2 64 43.8
BcaC02g07340 Brassica carinata HOM05D002666 ORTHO05D004769 4.4e-07 57.8 62 45.2
Aa31LG2G19600 Aethionema arabicum HOM05D002666 ORTHO05D004769 7.5e-07 57.0 64 46.9
BcaC02g07369 Brassica carinata HOM05D002666 ORTHO05D004769 9.8e-07 56.6 64 46.9
A01p06350 Brassica napus HOM05D002666 ORTHO05D004769 1.7e-06 55.8 64 42.2
BraA01t00600Z Brassica rapa HOM05D002666 ORTHO05D004769 1.7e-06 55.8 64 42.2
BraA04t18378Z Brassica rapa HOM05D002666 ORTHO05D004769 1.7e-06 55.8 56 44.6
Thhalv10019458m.g Eutrema salsugineum HOM05D002666 ORTHO05D004769 1.7e-06 55.8 51 56.9
Aa31LG8G17540 Aethionema arabicum HOM05D002666 ORTHO05D004769 2.2e-06 55.5 62 41.9
BcaNung03124 Brassica carinata HOM05D002666 ORTHO05D004769 2.2e-06 55.5 68 39.7
BcaC09g52209 Brassica carinata HOM05D002666 ORTHO05D004769 2.9e-06 55.1 85 38.8
C01p09850 Brassica napus HOM05D002666 ORTHO05D004769 2.9e-06 55.1 85 38.8
BolC1t00947H Brassica oleracea HOM05D002666 ORTHO05D004769 2.9e-06 55.1 85 38.8
BcaC09g52206 Brassica carinata HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
BcaC09g52215 Brassica carinata HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
C01p09810 Brassica napus HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
C01p09860 Brassica napus HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
BolC1t00942H Brassica oleracea HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
BolC1t00948H Brassica oleracea HOM05D002666 ORTHO05D004769 3.7e-06 54.7 84 39.3
Aa31LG10G8180 Aethionema arabicum HOM05D002666 ORTHO05D004769 4.9e-06 54.3 56 42.9
AT2G20620 Arabidopsis thaliana HOM05D002666 ORTHO05D004769 4.9e-06 54.3 63 44.4
BcaC09g51926 Brassica carinata HOM05D002666 ORTHO05D004769 4.9e-06 54.3 64 42.2
AL7G22850 Arabidopsis lyrata HOM05D002666 ORTHO05D004769 6.4e-06 53.9 62 45.2
BcaNung03123 Brassica carinata HOM05D002666 ORTHO05D004769 6.4e-06 53.9 64 40.6
Aa31sc38G80 Aethionema arabicum HOM05D002666 ORTHO05D004769 8.3e-06 53.5 62 43.5
BraA01t00797Z Brassica rapa HOM05D002666 ORTHO05D004769 8.3e-06 53.5 86 38.4
Carub.0006s2550 Capsella rubella HOM05D002666 ORTHO05D004769 8.3e-06 53.5 63 47.6


User provided reference genes

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