Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 9.6e-29 129.4 63 100.0
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 7.6e-26 119.8 63 95.2
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 3.2e-16 87.8 65 72.3
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 7.2e-16 86.7 65 73.8
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.2e-15 85.9 57 77.2
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.2e-15 85.9 57 77.2
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 2.1e-15 85.1 58 75.9
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 7.9e-15 83.2 58 74.1
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 1.0e-14 82.8 58 74.1
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 2.3e-14 81.6 58 70.7
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 2.3e-14 81.6 58 70.7
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 3.9e-14 80.9 58 70.7
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 3.9e-14 80.9 58 70.7
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 5.1e-14 80.5 58 70.7
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.8e-12 74.7 48 75.0
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 8.2e-12 73.2 48 75.0
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 1.1e-11 72.8 48 72.9
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.1e-11 72.8 48 75.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.1e-11 72.8 48 75.0
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.1e-11 72.8 48 75.0
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.4e-11 72.4 48 70.8
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 1.4e-11 72.4 48 72.9
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 1.4e-11 72.4 48 70.8
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.8e-11 72.0 48 72.9
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 3.1e-11 71.2 48 66.7
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 3.1e-11 71.2 48 68.8
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 3.1e-11 71.2 48 68.8
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 4.1e-11 70.9 48 70.8
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 4.1e-11 70.9 45 75.6
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 4.1e-11 70.9 48 66.7
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 4.1e-11 70.9 48 70.8
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 4.1e-11 70.9 42 83.3
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 6.9e-11 70.1 48 70.8
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 6.9e-11 70.1 41 82.9
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 9.1e-11 69.7 48 70.8
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.2e-10 69.3 48 70.8
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.2e-10 69.3 48 70.8
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 1.5e-10 68.9 48 68.8
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 1.5e-10 68.9 48 70.8
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 2.0e-10 68.6 46 73.9
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 2.6e-10 68.2 48 66.7
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 2.6e-10 68.2 48 68.8
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 2.6e-10 68.2 48 68.8
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 3.4e-10 67.8 47 68.1
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 3.4e-10 67.8 48 68.8
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 3.4e-10 67.8 48 64.6
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 4.5e-10 67.4 48 68.8
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 4.5e-10 67.4 58 60.3
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 4.5e-10 67.4 58 60.3
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 4.5e-10 67.4 48 66.7
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 4.5e-10 67.4 58 65.5
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 4.5e-10 67.4 48 64.6
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 4.5e-10 67.4 47 70.2
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 4.5e-10 67.4 42 76.2
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 4.5e-10 67.4 48 68.8
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 4.5e-10 67.4 48 68.8
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 5.9e-10 67.0 47 70.2
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.9e-10 67.0 48 72.9
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.9e-10 67.0 48 72.9
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 7.7e-10 66.6 47 70.2
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 7.7e-10 66.6 41 78.0
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 7.7e-10 66.6 58 56.9
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 7.7e-10 66.6 58 60.3
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 7.7e-10 66.6 48 66.7
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 7.7e-10 66.6 48 66.7
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 7.7e-10 66.6 48 66.7
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 7.7e-10 66.6 48 70.8
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.0e-09 66.2 41 80.5
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.3e-09 65.9 48 64.6
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 1.3e-09 65.9 48 64.6
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.7e-09 65.5 58 60.3
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.7e-09 65.5 47 68.1
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 1.7e-09 65.5 47 68.1
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 2.2e-09 65.1 48 64.6
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 2.9e-09 64.7 57 59.6
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 2.9e-09 64.7 47 68.1
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 2.9e-09 64.7 58 63.8
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 2.9e-09 64.7 38 76.3
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 3.8e-09 64.3 47 68.1
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 3.8e-09 64.3 49 63.3
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 3.8e-09 64.3 47 59.6
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 5.0e-09 63.9 54 63.0
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 6.5e-09 63.5 48 64.6
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 1.4e-08 62.4 57 57.9
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.9e-08 62.0 48 64.6
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 2.5e-08 61.6 47 61.7
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 3.2e-08 61.2 48 62.5
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 4.2e-08 60.8 48 60.4
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 5.5e-08 60.5 48 64.6
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 5.5e-08 60.5 48 64.6
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.2e-07 59.3 57 56.1
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 1.2e-07 59.3 48 60.4
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 3.6e-07 57.8 47 57.4
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 1.0e-06 56.2 47 59.6
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 5.1e-06 53.9 48 54.2


User provided reference genes

Program Settings