Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 5.1e-70 268.5 137 100.0
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 2.7e-63 246.1 132 94.7
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 2.7e-63 246.1 132 94.7
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 7.9e-63 244.6 137 92.7
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 3.9e-62 242.3 138 92.8
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 8.5e-49 198.0 138 78.3
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 2.5e-48 196.4 141 81.6
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 4.6e-47 192.2 137 77.4
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.3e-45 185.7 136 73.5
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.0e-37 160.2 138 64.5
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.1e-35 154.5 158 58.2
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 1.5e-32 144.1 141 61.0
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 5.7e-29 132.1 142 56.3
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.5e-18 95.9 133 45.9
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.5e-13 80.9 148 37.8
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 5.7e-13 79.0 134 38.8
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.3e-12 77.8 113 43.4
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 1.7e-12 77.4 134 38.8
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.3e-12 75.5 88 52.3
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.3e-12 75.5 115 43.5
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 6.3e-12 75.5 143 38.5
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.1e-11 74.7 129 40.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-11 73.9 115 42.6
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.8e-11 73.9 133 44.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 3.1e-11 73.2 153 34.6
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 7.0e-11 72.0 136 36.8
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.2e-10 71.2 149 36.9
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.2e-10 71.2 154 32.5
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.6e-10 70.9 154 31.8
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.0e-10 70.5 138 36.2
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.0e-10 70.5 91 46.2
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 2.0e-10 70.5 136 33.1
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.7e-10 70.1 97 43.3
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.5e-10 69.7 149 35.6
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.5e-10 69.3 153 33.3
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 4.5e-10 69.3 142 38.0
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.5e-10 69.3 78 52.6
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 4.5e-10 69.3 155 31.0
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.9e-10 68.9 154 32.5
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 5.9e-10 68.9 87 46.0
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 7.7e-10 68.6 94 43.6
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.7e-10 68.6 150 36.0
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.7e-10 68.6 139 37.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 7.7e-10 68.6 130 35.4
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.0e-09 68.2 114 44.7
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.0e-09 68.2 147 36.1
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-09 67.8 130 40.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-09 67.8 159 34.6
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.3e-09 67.8 158 31.6
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.3e-09 67.8 154 35.1
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.7e-09 67.4 149 36.9
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.7e-09 67.4 146 37.7
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.3e-09 67.0 143 36.4
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.3e-09 67.0 136 35.3
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 3.8e-09 66.2 150 33.3
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 5.0e-09 65.9 159 34.0
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 5.0e-09 65.9 69 49.3
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 6.6e-09 65.5 124 38.7
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 6.6e-09 65.5 150 34.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.6e-09 65.5 154 35.7
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.6e-09 65.5 154 35.7
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 8.6e-09 65.1 75 45.3
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.6e-09 65.1 129 38.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.6e-09 65.1 152 35.5
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 8.6e-09 65.1 69 50.7
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 8.6e-09 65.1 148 34.5
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.1e-08 64.7 73 43.8
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.5e-08 64.3 148 33.8
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.5e-08 64.3 69 46.4
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.9e-08 63.9 138 36.2
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-08 63.9 150 33.3
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.9e-08 63.9 154 33.1
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.9e-08 63.9 140 32.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 2.5e-08 63.5 98 40.8
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-08 63.5 154 35.1
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 2.5e-08 63.5 129 35.7
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.5e-08 63.5 88 40.9
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 3.3e-08 63.2 139 34.5
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.3e-08 63.2 157 35.0
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.3e-08 62.8 66 45.5
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.3e-08 62.8 140 34.3
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 4.3e-08 62.8 139 32.4
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 4.3e-08 62.8 65 52.3
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 4.3e-08 62.8 131 39.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 4.3e-08 62.8 153 32.7
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 5.6e-08 62.4 140 32.1
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 5.6e-08 62.4 151 31.8
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 5.6e-08 62.4 81 40.7
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 5.6e-08 62.4 63 50.8
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 5.6e-08 62.4 130 33.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.6e-08 62.4 71 47.9
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 7.3e-08 62.0 69 44.9
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.3e-08 62.0 67 49.3
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 7.3e-08 62.0 69 50.7
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.3e-08 62.0 117 34.2
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 7.3e-08 62.0 155 31.6
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 7.3e-08 62.0 108 34.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 7.3e-08 62.0 127 36.2
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 9.5e-08 61.6 73 42.5
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 9.5e-08 61.6 67 40.3
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.5e-08 61.6 67 40.3
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 9.5e-08 61.6 101 40.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 1.2e-07 61.2 80 42.5
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.2e-07 61.2 69 43.5
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.2e-07 61.2 69 47.8
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.2e-07 61.2 69 43.5
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.2e-07 61.2 69 43.5
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 1.6e-07 60.8 80 42.5
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 1.6e-07 60.8 149 36.2
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.6e-07 60.8 86 40.7
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.6e-07 60.8 64 50.0
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.6e-07 60.8 73 45.2
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.6e-07 60.8 136 30.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.6e-07 60.8 75 34.7
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.6e-07 60.8 148 33.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.6e-07 60.8 69 49.3
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.6e-07 60.8 92 44.6
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.1e-07 60.5 152 30.9
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.1e-07 60.5 67 43.3
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-07 60.1 67 38.8
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 2.8e-07 60.1 98 40.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.6e-07 59.7 91 40.7
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 3.6e-07 59.7 104 36.5
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.7e-07 59.3 73 32.9
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 4.7e-07 59.3 63 50.8
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 4.7e-07 59.3 151 35.8
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 4.7e-07 59.3 140 32.9
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 4.7e-07 59.3 80 38.8
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 4.7e-07 59.3 147 32.7
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 6.1e-07 58.9 71 43.7
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.1e-07 58.9 71 43.7
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 6.1e-07 58.9 95 36.8
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 6.1e-07 58.9 141 32.6
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 8.0e-07 58.5 147 32.0
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.0e-07 58.5 73 41.1
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.0e-07 58.5 69 44.9
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 8.0e-07 58.5 71 45.1
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.0e-06 58.2 108 37.0
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.4e-06 57.8 73 41.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.4e-06 57.8 68 48.5
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.8e-06 57.4 71 42.3
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-06 57.4 63 49.2
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.8e-06 57.4 84 39.3
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.8e-06 57.4 95 36.8
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.8e-06 57.4 67 46.3
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 2.3e-06 57.0 63 44.4
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 2.3e-06 57.0 125 31.2
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.3e-06 57.0 67 46.3
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 3.0e-06 56.6 156 30.1
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 4.0e-06 56.2 161 29.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 4.0e-06 56.2 120 30.8
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 4.0e-06 56.2 158 30.4
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 5.2e-06 55.8 58 36.2
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 5.2e-06 55.8 83 39.8
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.2e-06 55.8 67 46.3
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 5.2e-06 55.8 63 42.9
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 6.8e-06 55.5 104 36.5
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 6.8e-06 55.5 98 35.7
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 6.8e-06 55.5 111 33.3
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.9e-06 55.1 63 47.6
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 8.9e-06 55.1 137 35.8
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 8.9e-06 55.1 112 33.0
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 8.9e-06 55.1 111 33.3


User provided reference genes

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