Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 5.8e-242 840.5 434 100.0
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.4e-227 792.7 434 95.4
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 9.7e-221 770.0 434 92.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 2.8e-220 768.5 436 92.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 2.6e-189 665.6 439 81.3
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 2.8e-183 645.6 438 79.5
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 9.8e-181 637.1 441 78.5
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 2.2e-180 636.0 443 79.2
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 4.9e-180 634.8 436 78.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.8e-179 632.9 444 77.9
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 1.1e-171 607.1 445 73.9
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.4e-155 553.5 442 69.9
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.9e-123 446.8 452 55.8
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 5.5e-123 445.3 475 52.6
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 4.8e-119 432.2 465 53.8
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.4e-118 430.6 465 53.3
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.1e-118 429.5 465 53.3
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 3.4e-117 426.0 460 52.8
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 5.8e-117 425.2 438 54.6
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 7.6e-117 424.9 486 52.3
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.9e-116 422.9 470 53.6
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 3.8e-116 422.5 464 53.2
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 5.0e-116 422.2 510 49.2
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 6.5e-116 421.8 463 52.5
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 3.2e-115 419.5 503 48.5
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 5.5e-115 418.7 461 53.6
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 7.1e-115 418.3 455 53.4
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 2.1e-114 416.8 469 53.7
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 3.5e-114 416.0 464 53.0
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.0e-113 414.5 474 52.1
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.7e-113 411.8 455 53.0
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 6.7e-113 411.8 461 51.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 5.7e-112 408.7 462 49.1
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 9.7e-112 407.9 462 51.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 9.7e-112 407.9 459 51.6
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.3e-111 407.5 455 53.0
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.6e-111 407.1 455 52.7
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 2.2e-111 406.8 463 50.1
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 4.8e-111 405.6 463 49.9
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 1.4e-110 404.1 454 50.9
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.8e-110 403.7 507 47.9
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.4e-110 403.3 505 50.1
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 1.5e-109 400.6 511 47.0
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 4.5e-109 399.1 468 48.9
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 4.5e-109 399.1 489 49.7
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.5e-109 399.1 465 49.5
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 7.7e-109 398.3 506 48.0
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.0e-108 397.9 505 49.3
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.0e-108 397.9 509 47.5
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.3e-108 397.5 447 53.7
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 6.5e-108 395.2 509 47.0
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 7.2e-107 391.7 460 50.2
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-106 390.6 506 47.8
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 5.1e-105 385.6 441 49.9
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 2.0e-104 383.6 467 49.9
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.0e-104 383.6 465 49.7
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 3.7e-103 379.4 503 47.3
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 5.9e-101 372.1 475 46.5
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.4e-99 367.5 461 48.8
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.5e-99 366.7 469 46.7
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 2.5e-99 366.7 449 49.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.5e-99 366.7 458 49.8
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 7.2e-99 365.2 488 46.9
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.7e-98 362.5 483 46.4
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 5.1e-97 359.0 442 47.1
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 8.8e-97 358.2 464 47.4
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 8.8e-97 358.2 458 45.9
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 3.3e-96 356.3 472 45.3
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.3e-95 354.4 457 46.0
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 3.7e-95 352.8 464 46.3
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 3.1e-94 349.7 491 43.2
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 3.1e-94 349.7 464 45.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 4.1e-94 349.4 441 46.3
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 5.3e-94 349.0 459 45.5
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.0e-93 347.1 479 45.7
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 3.8e-92 342.8 407 50.1
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 2.5e-91 340.1 467 46.3
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.2e-90 337.8 408 51.0
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 4.7e-90 335.9 469 44.3
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.2e-85 321.2 384 50.3
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 3.5e-85 319.7 435 44.4
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.0e-84 318.2 426 46.5
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 1.3e-84 317.8 429 47.1
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.2e-82 311.2 530 40.9
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.9e-75 287.3 434 43.3
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 4.2e-75 286.2 430 41.4
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 9.4e-75 285.0 393 46.3
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.0e-73 281.6 457 39.2
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 3.1e-70 270.0 431 40.8
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 4.7e-66 256.1 436 39.2
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 6.1e-66 255.8 401 42.6
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.4e-62 243.8 337 45.7
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.0e-60 238.4 339 44.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.9e-60 236.5 378 41.5
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 3.3e-59 233.4 194 61.9
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 7.5e-56 222.2 297 44.8
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 6.0e-53 212.6 212 56.6
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 7.8e-53 212.2 174 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 8.6e-52 208.8 544 31.6
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 7.3e-51 205.7 284 44.7
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 7.3e-51 205.7 507 31.4
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 7.5e-48 195.7 228 50.4
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 2.2e-47 194.1 458 33.0
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 1.6e-45 188.0 242 47.5
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.3e-43 180.3 211 50.7
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 7.3e-43 179.1 123 69.9
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.3e-41 174.1 370 31.6
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.9e-36 156.8 123 65.0
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 2.5e-35 154.1 268 39.6
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 3.3e-35 153.7 197 42.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.7e-23 114.8 143 50.3
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 7.1e-22 109.4 69 76.8
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.7e-21 107.5 69 73.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-18 98.6 127 46.5
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 8.7e-12 75.9 95 49.5
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.5e-11 75.1 48 72.9
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.6e-10 71.6 135 31.1
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.6e-08 64.3 52 61.5
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 2.9e-07 60.8 171 31.6
BcaC07g36929 Brassica carinata HOM05D006388 ORTHO05D008026 2.5e-06 57.8 28 96.4
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 5.5e-06 56.6 76 44.7


User provided reference genes

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