Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p18690 Brassica napus HOM05D001122 ORTHO05D001877 1.7e-92 342.8 192 100.0
C01p35710 Brassica napus HOM05D001122 ORTHO05D001877 1.7e-92 342.8 192 100.0
BraA02t06911Z Brassica rapa HOM05D001122 ORTHO05D001877 1.7e-92 342.8 192 100.0
A09p55280 Brassica napus HOM05D001122 ORTHO05D001877 4.8e-79 298.1 192 90.6
C08p26890 Brassica napus HOM05D001122 ORTHO05D001877 1.6e-71 273.1 177 88.1
BraA09t39946Z Brassica rapa HOM05D001122 ORTHO05D001877 6.2e-71 271.2 178 88.8
BcaB01g00491 Brassica carinata HOM05D001122 ORTHO05D001877 8.2e-71 270.8 177 87.0
BolC8t50306H Brassica oleracea HOM05D001122 ORTHO05D001877 8.2e-71 270.8 177 87.0
A09p44840 Brassica napus HOM05D001122 ORTHO05D001877 1.4e-70 270.0 178 88.2
BcaB01g00426 Brassica carinata HOM05D001122 ORTHO05D001877 1.5e-64 250.0 177 83.6
BolC4t24320H Brassica oleracea HOM05D001122 ORTHO05D001877 2.7e-58 229.2 181 76.8
BcaC02g10693 Brassica carinata HOM05D001122 ORTHO05D001877 1.4e-57 226.9 180 77.2
BolC4t24129H Brassica oleracea HOM05D001122 ORTHO05D001877 1.4e-57 226.9 180 77.2
Thhalv10010401m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 8.8e-57 224.2 190 72.6
C04p27770 Brassica napus HOM05D001122 ORTHO05D001877 1.5e-56 223.4 175 77.1
C04p26740 Brassica napus HOM05D001122 ORTHO05D001877 4.8e-55 218.4 176 75.6
A04p13670 Brassica napus HOM05D001122 ORTHO05D001877 4.5e-53 211.8 175 74.9
Carub.0005s1806 Capsella rubella HOM05D001122 ORTHO05D001877 1.8e-49 199.9 194 67.0
AL5G32170 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 3.9e-49 198.7 184 67.9
AT3G51720 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 1.8e-41 173.3 196 61.7
CARHR161330 Cardamine hirsuta HOM05D001122 ORTHO05D001877 1.4e-38 163.7 182 61.5
BcaB01g00492 Brassica carinata HOM05D001122 ORTHO05D001877 2.5e-35 152.9 86 91.9
Sp5g10560 Schrenkiella parvula HOM05D001122 ORTHO05D001877 1.8e-30 136.7 96 77.1
A02p14660 Brassica napus HOM05D001122 ORTHO05D001877 1.2e-29 134.0 114 71.1
BcaB01g00493 Brassica carinata HOM05D001122 ORTHO05D001877 4.4e-24 115.5 80 85.0
A03p21230 Brassica napus HOM05D001122 ORTHO05D001877 5.7e-24 115.2 204 45.1
BraA03t11360Z Brassica rapa HOM05D001122 ORTHO05D001877 5.7e-24 115.2 204 45.1
BolC8t48053H Brassica oleracea HOM05D001122 ORTHO05D001877 9.8e-24 114.4 91 78.0
Sp4g20690 Schrenkiella parvula HOM05D001122 ORTHO05D001877 2.1e-18 96.7 232 39.7
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 3.6e-18 95.9 232 38.4
BcaC02g07470 Brassica carinata HOM05D001122 ORTHO05D001877 6.1e-18 95.1 236 37.3
C04p66660 Brassica napus HOM05D001122 ORTHO05D001877 6.1e-18 95.1 236 37.3
BolC4t28168H Brassica oleracea HOM05D001122 ORTHO05D001877 6.1e-18 95.1 236 37.3
AT2G38370 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 8.0e-18 94.7 233 37.3
BolC3t14902H Brassica oleracea HOM05D001122 ORTHO05D001877 1.0e-17 94.4 217 40.1
CANSAT35G1567 Cannabis sativa HOM05D001122 ORTHO05D001877 1.0e-17 94.4 241 36.1
COL.COLO4_30003 Corchorus olitorius HOM05D001122 ORTHO05D001877 1.4e-17 94.0 239 37.7
BcaC01g05545 Brassica carinata HOM05D001122 ORTHO05D001877 1.8e-17 93.6 217 39.6
C03p25110 Brassica napus HOM05D001122 ORTHO05D001877 5.2e-17 92.0 217 39.6
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 5.2e-17 92.0 240 36.2
BcaC07g37682 Brassica carinata HOM05D001122 ORTHO05D001877 1.2e-16 90.9 99 59.6
Duzib151G1105 Durio zibethinus HOM05D001122 ORTHO05D001877 1.2e-16 90.9 252 35.3
Manes.09G115600 Manihot esculenta HOM05D001122 ORTHO05D001877 1.5e-16 90.5 239 34.7
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 2.6e-16 89.7 238 36.1
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 2.6e-16 89.7 234 35.0
Atru.chr8.2373 Acer truncatum HOM05D001122 ORTHO05D001877 5.7e-16 88.6 237 34.6
CiPaw.10G163900 Carya illinoinensis HOM05D001122 ORTHO05D001877 9.8e-16 87.8 240 35.0
MD12G1184800 Malus domestica HOM05D001122 ORTHO05D001877 9.8e-16 87.8 239 35.1
Carub.0004s2034 Capsella rubella HOM05D001122 ORTHO05D001877 1.7e-15 87.0 233 38.6
Nn2g11099 Nelumbo nucifera HOM05D001122 ORTHO05D001877 8.3e-15 84.7 221 33.9
Actinidia29048 Actinidia chinensis HOM05D001122 ORTHO05D001877 1.1e-14 84.3 233 36.1
Duzib212G0698 Durio zibethinus HOM05D001122 ORTHO05D001877 1.4e-14 84.0 234 35.5
TAR636G1426 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.4e-14 84.0 240 33.8
Oeu060448.2 Olea europaea HOM05D001122 ORTHO05D001877 1.8e-14 83.6 193 37.8
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 3.1e-14 82.8 231 33.8
TAR629G1123 Trochodendron aralioides HOM05D001122 ORTHO05D001877 3.1e-14 82.8 240 33.3
Oeu026964.1 Olea europaea HOM05D001122 ORTHO05D001877 4.1e-14 82.4 185 35.7
Nitab4.5_0000126g0030 Nicotiana tabacum HOM05D001122 ORTHO05D001877 5.4e-14 82.0 227 33.9
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 5.4e-14 82.0 235 34.5
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 7.0e-14 81.6 235 33.6
Lsat_1_v5_gn_5_148221 Lactuca sativa HOM05D001122 ORTHO05D001877 9.2e-14 81.3 222 32.9
MBI15_g27352_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D001877 9.2e-14 81.3 238 34.9
Glyma.01G131300 Glycine max HOM05D001122 ORTHO05D001877 1.2e-13 80.9 241 33.6
Ah.15g090230 Amaranthus hybridus HOM05D001122 ORTHO05D001877 1.6e-13 80.5 234 32.1
AL4G35590 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.6e-13 80.5 233 39.5
Prupe.6G289900 Prunus persica HOM05D001122 ORTHO05D001877 1.6e-13 80.5 226 35.0
CSS0040395 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 3.5e-13 79.3 218 35.3
CSS0044199 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 3.5e-13 79.3 218 35.3
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 4.5e-13 79.0 233 34.3
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 5.9e-13 78.6 236 34.3
THA.LOC104806079 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 5.9e-13 78.6 244 34.0
HanXRQChr10g0298251 Helianthus annuus HOM05D001122 ORTHO05D001877 7.8e-13 78.2 223 32.7
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 7.8e-13 78.2 240 33.3
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 7.8e-13 78.2 240 33.3
Sopen09g015510 Solanum pennellii HOM05D001122 ORTHO05D001877 1.0e-12 77.8 219 33.3
ECA248G3012 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.3e-12 77.4 228 31.1
VMungo0331G1084 Vigna mungo HOM05D001122 ORTHO05D001877 1.3e-12 77.4 236 32.2
FAN02G1434 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.7e-12 77.0 226 35.8
Solyc09g042710.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 1.7e-12 77.0 219 33.3
A04p29360 Brassica napus HOM05D001122 ORTHO05D001877 2.9e-12 76.3 237 34.6
BcaB01g03695 Brassica carinata HOM05D001122 ORTHO05D001877 3.8e-12 75.9 184 40.8
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 3.8e-12 75.9 195 33.3
EL10Ac7g17055 Beta vulgaris HOM05D001122 ORTHO05D001877 5.0e-12 75.5 245 31.4
CAN.G15.26 Capsicum annuum HOM05D001122 ORTHO05D001877 5.0e-12 75.5 219 33.3
PGR031G0394 Punica granatum HOM05D001122 ORTHO05D001877 5.0e-12 75.5 236 33.9
Aqoxy2G00742 Aquilegia oxysepala HOM05D001122 ORTHO05D001877 6.6e-12 75.1 240 32.1
Thecc.04G155100 Theobroma cacao HOM05D001122 ORTHO05D001877 6.6e-12 75.1 239 34.7
FAN09G1334 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.1e-11 74.3 226 35.4
Lj3g0016412 Lotus japonicus HOM05D001122 ORTHO05D001877 1.1e-11 74.3 221 35.7
Phvul.010G067400 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 1.1e-11 74.3 240 31.2
AL4G35550 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.5e-11 73.9 143 39.9
Glyma.03G037500 Glycine max HOM05D001122 ORTHO05D001877 1.9e-11 73.6 242 30.6
FAN05G1096 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.5e-11 73.2 223 35.0
Cpa.g.sc86.25 Carica papaya HOM05D001122 ORTHO05D001877 3.3e-11 72.8 252 31.0
Haze_21139 Corylus avellana HOM05D001122 ORTHO05D001877 3.3e-11 72.8 240 33.8
Haze_21145 Corylus avellana HOM05D001122 ORTHO05D001877 3.3e-11 72.8 240 33.8
DCAR_028909 Daucus carota HOM05D001122 ORTHO05D001877 4.3e-11 72.4 236 30.5
VMungo1383G2320 Vigna mungo HOM05D001122 ORTHO05D001877 4.3e-11 72.4 232 31.9
CSS0030369 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 7.3e-11 71.6 242 33.1
vmacro20355 Vaccinium macrocarpon HOM05D001122 ORTHO05D001877 7.3e-11 71.6 219 34.7
QL07p032789 Quercus lobata HOM05D001122 ORTHO05D001877 9.5e-11 71.2 240 35.4
Hund03744 Selenicereus undatus HOM05D001122 ORTHO05D001877 1.2e-10 70.9 236 30.9
MD04G1171400 Malus domestica HOM05D001122 ORTHO05D001877 1.6e-10 70.5 239 33.5
TPR.G5005 Trifolium pratense HOM05D001122 ORTHO05D001877 1.6e-10 70.5 237 32.1
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 2.8e-10 69.7 240 35.0
FAN14G3888 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.8e-10 69.7 221 34.4
Phvul.008G086500 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 2.8e-10 69.7 232 32.3
HanXRQChr01g0000001 Helianthus annuus HOM05D001122 ORTHO05D001877 3.6e-10 69.3 229 31.0
Aa31sc463G20 Aethionema arabicum HOM05D001122 ORTHO05D001877 6.1e-10 68.6 201 37.3
AUR62006350 Chenopodium quinoa HOM05D001122 ORTHO05D001877 6.1e-10 68.6 247 30.8
Glyma.19G111700 Glycine max HOM05D001122 ORTHO05D001877 6.1e-10 68.6 231 31.2
THA.LOC104806629 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 6.1e-10 68.6 96 52.1
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 8.0e-10 68.2 241 33.6
Cc06_g00550 Coffea canephora HOM05D001122 ORTHO05D001877 1.0e-09 67.8 221 33.0
FvH4_6g10230 Fragaria vesca HOM05D001122 ORTHO05D001877 1.4e-09 67.4 221 33.9
Thhalv10016492m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 1.8e-09 67.0 234 31.6
AUR62029682 Chenopodium quinoa HOM05D001122 ORTHO05D001877 2.3e-09 66.6 247 30.8
Dinv25307 Davidia involucrata HOM05D001122 ORTHO05D001877 4.0e-09 65.9 220 31.4
Lj1g0026787 Lotus japonicus HOM05D001122 ORTHO05D001877 5.2e-09 65.5 238 32.4
BraA04t18404Z Brassica rapa HOM05D001122 ORTHO05D001877 6.8e-09 65.1 237 32.5
BcaB01g03692 Brassica carinata HOM05D001122 ORTHO05D001877 8.9e-09 64.7 228 34.6
Psat3g121320 Pisum sativum HOM05D001122 ORTHO05D001877 1.2e-08 64.3 244 30.7
Hma1.2p1_1052F.1_g252360 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 1.5e-08 63.9 238 32.8
Medtr4g029090 Medicago truncatula HOM05D001122 ORTHO05D001877 2.6e-08 63.2 233 32.2
Sabra06G0083500 Salix brachista HOM05D001122 ORTHO05D001877 2.6e-08 63.2 241 31.5
FAN05G3468 Fragaria x ananassa HOM05D001122 ORTHO05D001877 3.4e-08 62.8 197 31.5
Sc02g0000820 Simmondsia chinensis HOM05D001122 ORTHO05D001877 3.4e-08 62.8 234 31.6
PGSC0003DMG400029079 Solanum tuberosum HOM05D001122 ORTHO05D001877 3.4e-08 62.8 217 31.3
Dinv11391 Davidia involucrata HOM05D001122 ORTHO05D001877 5.8e-08 62.0 244 33.6
MELO3C026053.2 Cucumis melo HOM05D001122 ORTHO05D001877 7.5e-08 61.6 237 29.5
Solyc06g050350.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 7.5e-08 61.6 227 30.4
Sopen06g015840 Solanum pennellii HOM05D001122 ORTHO05D001877 7.5e-08 61.6 227 30.4
Glyma.18G211800 Glycine max HOM05D001122 ORTHO05D001877 9.8e-08 61.2 231 29.4
Lalb_Chr01g0023651 Lupinus albus HOM05D001122 ORTHO05D001877 9.8e-08 61.2 220 30.5
Medtr7g072550 Medicago truncatula HOM05D001122 ORTHO05D001877 9.8e-08 61.2 241 32.4
RcHm_v2.0_Chr3g0460971 Rosa chinensis HOM05D001122 ORTHO05D001877 9.8e-08 61.2 222 32.4
Sed0001794 Sechium edule HOM05D001122 ORTHO05D001877 2.2e-07 60.1 236 29.7
arahy.Tifrunner.gnm1.ann1.5K0G3N Arachis hypogaea HOM05D001122 ORTHO05D001877 2.9e-07 59.7 242 29.3
CiPaw.09G218300 Carya illinoinensis HOM05D001122 ORTHO05D001877 2.9e-07 59.7 242 33.1
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 3.7e-07 59.3 242 29.3
Ca_19776_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 3.7e-07 59.3 240 30.8
CsaV3_4G027040 Cucumis sativus L. HOM05D001122 ORTHO05D001877 3.7e-07 59.3 237 28.7
CsaV3_UNG107770 Cucumis sativus L. HOM05D001122 ORTHO05D001877 3.7e-07 59.3 237 28.7
Glyma.09G277300 Glycine max HOM05D001122 ORTHO05D001877 3.7e-07 59.3 230 28.7
ClCG04G006480 Citrullus lanatus HOM05D001122 ORTHO05D001877 4.9e-07 58.9 237 28.7
Eucgr.A00686 Eucalyptus grandis HOM05D001122 ORTHO05D001877 4.9e-07 58.9 212 32.5
Nitab4.5_0000263g0240 Nicotiana tabacum HOM05D001122 ORTHO05D001877 4.9e-07 58.9 230 30.4
ClCG10G022610 Citrullus lanatus HOM05D001122 ORTHO05D001877 6.4e-07 58.5 187 30.5
unitig_8.g3220 Utricularia gibba HOM05D001122 ORTHO05D001877 6.4e-07 58.5 214 29.9
MSTRG.5516 Avicennia marina HOM05D001122 ORTHO05D001877 8.3e-07 58.2 215 31.2
Lj3C942G13 Lonicera japonica HOM05D001122 ORTHO05D000051 8.3e-07 58.2 212 31.1
Hma1.2p1_0588F.1_g184575 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 1.1e-06 57.8 239 31.0
CAN.G111.30 Capsicum annuum HOM05D001122 ORTHO05D001877 1.9e-06 57.0 225 28.4
Nitab4.5_0002713g0010 Nicotiana tabacum HOM05D001122 ORTHO05D001877 1.9e-06 57.0 218 29.8
MSTRG.18958 Avicennia marina HOM05D001122 ORTHO05D001877 4.1e-06 55.8 231 28.6
Sc10g0002870 Simmondsia chinensis HOM05D001122 ORTHO05D001877 4.1e-06 55.8 192 32.8
TPR.G4407 Trifolium pratense HOM05D001122 ORTHO05D001877 4.1e-06 55.8 241 29.0
arahy.Tifrunner.gnm1.ann1.P0IKGX Arachis hypogaea HOM05D001122 ORTHO05D001877 5.4e-06 55.5 237 29.5
arahy.Tifrunner.gnm1.ann1.Y8SUHG Arachis hypogaea HOM05D001122 ORTHO05D001877 5.4e-06 55.5 237 29.5
Lalb_Chr07g0190691 Lupinus albus HOM05D001122 ORTHO05D001877 5.4e-06 55.5 239 28.9
Peaxi162Scf00732g00440 Petunia axillaris HOM05D001122 ORTHO05D001877 5.4e-06 55.5 143 34.3
Gohir.D02G005300 Gossypium hirsutum HOM05D001122 ORTHO05D001877 7.0e-06 55.1 222 30.2
Peaxi162Scf00464g00002 Petunia axillaris HOM05D001122 ORTHO05D001877 7.0e-06 55.1 220 29.1
Nitab4.5_0002938g0010 Nicotiana tabacum HOM05D001122 ORTHO05D001877 9.2e-06 54.7 166 31.3


User provided reference genes

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