Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 4.1e-159 564.7 289 100.0
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 4.1e-159 564.7 289 100.0
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 1.1e-138 496.9 295 88.8
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 5.2e-138 494.6 295 88.1
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 7.7e-89 331.3 369 59.3
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 1.1e-74 284.3 362 53.3
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 1.1e-55 221.1 489 37.2
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 4.2e-47 192.6 344 40.1
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 6.3e-43 178.7 409 38.4
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 3.5e-41 172.9 629 30.0
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 2.3e-37 160.2 322 40.1
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 3.4e-36 156.4 292 41.4
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 4.3e-31 139.4 647 28.0
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 2.1e-30 137.1 293 36.2
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 2.0e-28 130.6 293 35.8
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 9.8e-28 128.3 305 36.4
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 3.7e-27 126.3 306 35.9
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 7.1e-26 122.1 294 37.8
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 6.0e-25 119.0 292 33.6
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 6.0e-25 119.0 292 33.6
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 1.7e-24 117.5 292 33.6
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 4.3e-23 112.8 284 37.0
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 9.5e-23 111.7 157 47.1
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 2.8e-22 110.2 337 33.5
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 2.1e-14 84.0 293 29.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 4.0e-13 79.7 83 50.6
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 8.9e-13 78.6 111 42.3
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 4.4e-12 76.3 83 54.2
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 7.6e-12 75.5 140 41.4
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 1.3e-11 74.7 107 43.0
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.2e-11 73.9 86 46.5
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 2.9e-11 73.6 108 43.5
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 6.4e-11 72.4 105 44.8
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 1.1e-10 71.6 105 41.9
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.4e-10 71.2 104 39.4
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.4e-10 71.2 89 46.1
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 1.4e-10 71.2 83 45.8
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 1.9e-10 70.9 241 29.9
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.9e-10 70.9 104 38.5
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.9e-10 70.9 93 46.2
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 2.4e-10 70.5 132 39.4
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 4.2e-10 69.7 83 45.8
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 4.2e-10 69.7 122 38.5
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 4.2e-10 69.7 191 30.9
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 7.1e-10 68.9 88 45.5
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 9.3e-10 68.6 83 47.0
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 9.3e-10 68.6 298 30.2
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 1.2e-09 68.2 200 33.5
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 1.6e-09 67.8 104 40.4
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.1e-09 67.4 183 29.5
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 2.1e-09 67.4 96 42.7
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 3.5e-09 66.6 83 45.8
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.5e-09 66.6 83 45.8
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 4.6e-09 66.2 83 43.4
BcaB07g33996 Brassica carinata HOM05D009038 ORTHO05D010897 6.0e-09 65.9 69 53.6
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 6.0e-09 65.9 83 43.4
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 7.8e-09 65.5 226 28.3
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 7.8e-09 65.5 87 43.7
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.0e-08 65.1 103 42.7
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.3e-08 64.7 114 37.7
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.3e-08 64.7 83 44.6
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.7e-08 64.3 114 38.6
BcaB07g34003 Brassica carinata HOM05D009038 ORTHO05D010897 1.7e-08 64.3 63 54.0
BraA06t24527Z Brassica rapa HOM05D009038 ORTHO05D010897 3.9e-08 63.2 82 46.3
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.9e-08 63.2 244 30.7
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 5.1e-08 62.8 258 26.7
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 6.6e-08 62.4 242 26.9
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 6.6e-08 62.4 101 38.6
A06p13850 Brassica napus HOM05D009038 ORTHO05D010897 1.1e-07 61.6 82 46.3
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 1.5e-07 61.2 119 37.0
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.5e-07 61.2 138 35.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.9e-07 60.8 114 37.7
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.9e-07 60.8 229 27.1
BcaB07g34000 Brassica carinata HOM05D009038 ORTHO05D010897 4.3e-07 59.7 64 53.1
A06p13660 Brassica napus HOM05D009038 ORTHO05D010897 5.6e-07 59.3 82 45.1
A06p13800 Brassica napus HOM05D009038 ORTHO05D010897 5.6e-07 59.3 82 45.1
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.3e-06 58.2 90 43.3
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.6e-06 57.8 90 43.3
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.8e-06 57.0 207 30.9
BraA06t24517Z Brassica rapa HOM05D009038 ORTHO05D010897 3.6e-06 56.6 86 43.0
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 8.1e-06 55.5 105 36.2


User provided reference genes

Program Settings