Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-108 394.8 212 100.0
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-108 394.8 212 100.0
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 9.9e-94 347.1 217 84.3
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 9.9e-94 347.1 217 84.3
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 9.9e-94 347.1 217 84.3
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-88 328.9 214 81.8
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.2e-78 297.0 223 78.0
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.4e-76 290.0 223 76.2
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 1.1e-73 280.4 219 72.1
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.6e-72 276.6 228 71.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.4e-71 272.7 222 72.5
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.0e-69 267.3 226 72.1
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-69 266.9 222 69.4
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.9e-69 265.0 213 72.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 6.5e-69 264.6 215 74.0
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 8.4e-69 264.2 222 69.8
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.9e-68 263.1 213 72.3
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.5e-68 262.7 215 73.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 7.1e-68 261.2 228 71.1
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-67 260.4 214 69.2
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 4.6e-67 258.5 214 68.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 4.3e-65 251.9 202 74.3
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-52 210.3 183 70.5
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 4.2e-44 182.2 217 55.8
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 6.1e-43 178.3 196 57.1
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 9.7e-41 171.0 229 50.2
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 6.5e-37 158.3 213 47.9
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 7.5e-33 144.8 213 46.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 2.2e-32 143.3 213 45.5
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 5.3e-31 138.7 190 48.4
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.3e-31 138.7 212 45.8
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.7e-30 136.3 211 42.2
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.5e-28 130.6 168 48.8
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.1e-27 125.2 160 46.9
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.4e-26 124.0 212 40.6
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.4e-26 124.0 174 45.4
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 2.3e-26 123.2 212 41.0
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.0e-26 122.9 163 45.4
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 3.0e-26 122.9 200 38.5
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.0e-26 122.5 220 41.8
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 6.8e-26 121.7 210 47.1
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-25 120.9 213 46.5
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.5e-25 120.6 187 41.2
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 3.4e-25 119.4 169 45.6
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.4e-25 119.0 200 42.5
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 9.8e-25 117.9 214 39.3
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.7e-24 117.1 161 45.3
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.7e-24 117.1 198 41.9
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.7e-24 115.9 202 41.1
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 3.7e-24 115.9 167 43.7
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.8e-24 115.5 144 47.2
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 3.1e-23 112.8 188 40.4
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.1e-23 112.8 201 41.3
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.1e-23 112.5 198 42.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.1e-23 112.5 145 43.4
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.4e-23 112.1 170 43.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 5.4e-23 112.1 204 40.2
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 7.0e-23 111.7 178 41.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.5e-22 109.4 178 39.9
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 7.7e-22 108.2 163 44.2
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 7.7e-22 108.2 199 41.2
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.0e-21 107.8 181 40.3
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-21 107.5 151 42.4
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.7e-21 107.1 203 40.4
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.7e-21 107.1 203 40.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.7e-21 107.1 167 43.7
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.2e-21 106.7 217 41.5
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.9e-21 106.3 148 48.0
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.0e-21 105.5 206 38.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 5.0e-21 105.5 214 37.9
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 6.5e-21 105.1 220 43.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 6.5e-21 105.1 144 41.7
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 6.5e-21 105.1 204 37.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 8.5e-21 104.8 141 43.3
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.1e-20 104.4 178 38.2
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.5e-20 104.0 132 47.0
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.5e-20 103.2 141 44.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 3.2e-20 102.8 165 43.0
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 3.2e-20 102.8 210 41.0
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 4.2e-20 102.4 226 39.4
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 4.2e-20 102.4 183 39.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 7.2e-20 101.7 173 42.2
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 9.4e-20 101.3 145 44.1
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.2e-19 100.9 153 40.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.6e-19 100.5 199 43.7
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.6e-19 100.5 221 44.8
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 2.1e-19 100.1 141 41.8
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.1e-19 100.1 143 43.4
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.1e-19 100.1 193 37.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.7e-19 99.8 152 41.4
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.7e-19 99.8 173 38.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.6e-19 99.4 197 37.1
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 3.6e-19 99.4 143 43.4
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.0e-18 97.8 156 41.0
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.4e-18 97.4 175 42.3
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-18 97.4 152 40.8
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 2.3e-18 96.7 149 40.9
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 4.0e-18 95.9 150 41.3
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.2e-18 95.5 159 36.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 5.2e-18 95.5 165 38.8
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 5.2e-18 95.5 196 34.7
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 6.8e-18 95.1 152 40.1
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.2e-17 94.4 152 39.5
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 7.5e-17 91.7 152 36.2
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 7.5e-17 91.7 147 38.1
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.3e-16 90.9 141 41.1
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.2e-16 90.1 174 45.4
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.8e-16 89.7 167 38.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.8e-16 89.7 160 39.4
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.1e-15 87.8 149 40.9
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-15 87.4 149 38.3
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.4e-15 86.7 160 40.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 5.4e-15 85.5 141 41.8
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.0e-14 83.6 176 39.8
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 2.0e-14 83.6 196 34.7
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.7e-14 83.2 190 35.3
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.5e-14 82.8 132 40.9
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.7e-14 81.6 193 34.7
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.0e-13 81.3 181 38.1
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.3e-13 80.1 145 37.9
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 2.9e-13 79.7 183 33.3
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-12 77.8 193 34.2
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.3e-12 76.3 147 34.7
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.6e-11 73.9 166 38.0
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.1e-11 73.6 156 34.0
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.8e-11 73.2 203 34.0
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.6e-11 72.8 187 38.0
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.0e-10 71.2 131 40.5
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 3.0e-10 69.7 179 31.3
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.2e-10 68.9 164 36.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 5.2e-10 68.9 100 41.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.2e-09 67.8 103 42.7
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 2.0e-09 67.0 149 33.6
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.6e-09 66.6 146 34.9
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 3.4e-09 66.2 169 37.3
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 8.3e-08 61.6 188 32.4
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 7.0e-07 58.5 172 34.3
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 9.2e-07 58.2 191 35.6


User provided reference genes

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