Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 5.4e-71 271.2 165 100.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 2.3e-69 265.8 165 98.8
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 4.1e-63 245.0 169 92.9
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-63 245.0 169 92.9
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.7e-53 213.0 171 84.2
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 3.9e-53 211.8 167 75.4
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 3.9e-53 211.8 167 75.4
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 3.9e-53 211.8 167 75.4
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 5.6e-52 208.0 170 82.9
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.1e-44 183.7 181 73.5
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 2.8e-43 179.1 175 73.1
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.5e-41 173.3 174 63.2
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-41 172.9 179 71.5
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 9.9e-41 170.6 177 71.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 9.9e-41 170.6 177 71.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.8e-40 168.7 175 70.9
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.3e-37 160.2 135 79.3
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.1e-34 150.6 170 64.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.6e-33 146.0 171 63.2
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.2e-32 142.9 159 61.6
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.0e-29 132.5 126 62.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.2e-25 120.6 121 54.5
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.6e-25 119.4 153 51.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.8e-25 118.2 124 55.6
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.3e-24 117.1 124 54.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.7e-24 116.7 192 42.7
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.9e-24 115.2 122 54.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 8.4e-24 114.4 144 50.7
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.4e-23 113.6 125 53.6
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.2e-23 112.5 191 42.9
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 7.1e-23 111.3 164 44.5
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-22 110.5 136 50.7
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.6e-22 110.2 144 50.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.5e-22 109.0 121 52.9
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.5e-22 109.0 167 44.9
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.6e-22 108.6 121 53.7
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 6.0e-22 108.2 199 41.7
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 7.9e-22 107.8 97 62.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 7.9e-22 107.8 122 52.5
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 7.9e-22 107.8 121 52.1
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 1.0e-21 107.5 118 53.4
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.0e-21 107.5 148 46.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.3e-21 107.1 148 45.9
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.3e-21 107.1 132 50.0
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.3e-21 106.3 190 43.2
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.0e-21 105.9 121 53.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 5.1e-21 105.1 121 53.7
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.1e-21 105.1 138 50.0
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 5.1e-21 105.1 118 50.0
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.1e-21 105.1 115 53.0
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.7e-21 104.8 118 51.7
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 8.7e-21 104.4 122 52.5
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.5e-20 103.6 167 45.5
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.5e-20 103.6 182 42.9
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.5e-20 103.6 163 44.8
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.5e-20 103.6 118 52.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.9e-20 103.2 143 49.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.9e-20 103.2 87 67.8
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 2.5e-20 102.8 117 49.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.5e-20 102.8 117 49.6
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.5e-20 102.8 120 51.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.5e-20 102.8 187 41.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.3e-20 102.4 101 57.4
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-20 102.4 149 45.0
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.3e-20 102.4 189 42.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 4.3e-20 102.1 140 47.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.3e-20 102.1 190 40.0
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.3e-20 102.1 123 51.2
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.6e-20 101.7 81 67.9
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 5.6e-20 101.7 117 52.1
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 5.6e-20 101.7 122 49.2
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 7.4e-20 101.3 122 50.0
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 9.6e-20 100.9 85 64.7
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 9.6e-20 100.9 146 47.3
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.3e-19 100.5 122 52.5
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.8e-19 99.4 183 42.1
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.8e-19 99.4 161 47.2
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.8e-19 99.4 97 60.8
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-19 99.0 142 44.4
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 3.6e-19 99.0 138 47.1
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.8e-19 98.6 121 51.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 6.2e-19 98.2 117 49.6
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 6.2e-19 98.2 118 49.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 6.2e-19 98.2 82 63.4
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 6.2e-19 98.2 143 47.6
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 8.1e-19 97.8 123 50.4
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.1e-19 97.8 123 48.0
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.1e-18 97.4 105 56.2
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.1e-18 97.4 76 68.4
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.1e-18 97.4 106 55.7
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.1e-18 97.4 82 64.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 1.1e-18 97.4 112 54.5
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.1e-18 97.4 117 53.8
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.4e-18 97.1 130 45.4
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.8e-18 96.7 110 55.5
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.4e-18 96.3 134 49.3
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.1e-18 95.9 81 65.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.0e-18 95.5 104 57.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.0e-18 95.5 148 45.9
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 4.0e-18 95.5 130 44.6
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.0e-18 95.5 80 67.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 5.3e-18 95.1 104 57.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 6.9e-18 94.7 129 47.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 6.9e-18 94.7 101 55.4
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 9.0e-18 94.4 117 53.0
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 9.0e-18 94.4 81 65.4
BcaC08g46579 Brassica carinata HOM05D004771 ORTHO05D005565 1.2e-17 94.0 85 83.5
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.2e-17 94.0 104 56.7
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.2e-17 94.0 104 56.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.2e-17 94.0 135 52.6
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.5e-17 93.6 164 43.9
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.6e-17 92.8 127 52.0
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.6e-17 92.8 104 55.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 5.8e-17 91.7 131 50.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.8e-17 91.7 80 60.0
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.7e-16 90.1 130 50.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.7e-16 90.1 95 55.8
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 8.4e-16 87.8 103 54.4
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 8.4e-16 87.8 130 42.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.1e-15 87.4 106 52.8
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.1e-15 87.4 75 62.7
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.4e-15 87.0 124 45.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.4e-15 87.0 94 55.3
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.4e-15 87.0 103 49.5
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.4e-15 86.3 112 50.0
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 7.1e-15 84.7 67 65.7
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 9.3e-15 84.3 116 50.9
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 9.3e-15 84.3 93 53.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.1e-14 83.2 124 45.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.1e-14 83.2 93 52.7
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.1e-14 83.2 93 52.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.0e-13 80.9 71 60.6
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.3e-13 80.5 120 50.8
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.9e-13 79.0 60 70.0
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.7e-13 78.2 110 51.8
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.3e-12 75.9 80 56.2
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 2.1e-11 73.2 139 43.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.1e-11 73.2 101 47.5
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 3.7e-11 72.4 140 40.7
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.1e-10 70.9 94 48.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.0e-10 68.9 46 76.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 6.9e-10 68.2 130 39.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 9.0e-10 67.8 120 43.3
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.5e-09 65.5 46 71.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.6e-09 64.7 56 60.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-08 63.9 44 70.5
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 1.7e-08 63.5 140 33.6
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.5e-07 59.7 68 58.8
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.2e-07 58.9 78 52.6
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 7.1e-07 58.2 73 49.3
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-06 57.0 45 62.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.0e-06 55.1 111 40.5


User provided reference genes

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