Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 0.0e+00 1424.5 859 100.0
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 0.0e+00 1332.4 895 89.8
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 0.0e+00 1140.6 868 86.2
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 0.0e+00 1104.0 897 80.4
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 0.0e+00 1096.3 792 85.7
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 1.9e-300 1035.8 866 77.4
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 1.4e-250 870.2 923 65.4
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 3.6e-227 792.3 869 64.0
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 4.0e-218 762.3 898 62.6
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 3.3e-204 716.1 938 57.1
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 1.4e-178 630.9 950 51.6
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.1e-167 594.7 620 68.9
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 7.7e-145 518.8 654 60.9
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 1.5e-63 248.8 919 30.9
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.6e-57 228.8 899 29.8
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 3.5e-57 227.6 953 30.3
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 2.3e-56 224.9 821 33.0
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.3e-56 224.9 848 32.2
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 4.3e-55 220.7 919 32.0
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 9.6e-55 219.5 919 31.9
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 4.8e-54 217.2 891 32.0
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 1.1e-53 216.1 868 34.7
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 2.4e-53 214.9 884 29.6
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 6.9e-53 213.4 908 31.7
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 1.2e-52 212.6 921 31.1
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 2.0e-52 211.8 1069 29.1
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 7.6e-52 209.9 770 31.0
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 8.4e-51 206.5 817 32.3
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 1.4e-50 205.7 762 32.8
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 6.1e-49 200.3 777 30.4
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 2.3e-48 198.4 1039 32.3
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 6.7e-48 196.8 646 31.0
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 9.7e-47 193.0 1003 27.9
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 1.6e-46 192.2 1066 30.1
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 2.2e-46 191.8 888 31.3
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 8.2e-46 189.9 783 29.4
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 4.5e-44 184.1 929 30.1
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 7.7e-44 183.3 691 34.3
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.1e-42 179.5 574 32.1
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 3.2e-42 177.9 1027 32.0
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.2e-42 177.9 835 30.8
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 5.5e-42 177.2 927 27.7
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 7.2e-42 176.8 897 27.5
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.6e-41 175.6 905 28.8
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 3.6e-41 174.5 760 30.8
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 2.3e-40 171.8 840 28.8
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 3.0e-40 171.4 822 30.2
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.5e-39 168.3 839 28.4
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 2.8e-38 164.9 892 29.5
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 1.4e-37 162.5 1066 27.5
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 1.8e-37 162.2 885 29.8
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 9.1e-37 159.8 652 31.3
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 3.4e-36 157.9 752 28.3
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 4.5e-36 157.5 971 27.9
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 1.0e-35 156.4 410 33.7
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 2.2e-35 155.2 924 28.8
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 2.2e-35 155.2 882 27.6
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 4.2e-34 151.0 995 27.8
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 7.2e-34 150.2 1054 28.6
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 7.2e-34 150.2 566 29.7
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 9.4e-34 149.8 821 29.2
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 1.2e-33 149.4 882 27.3
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 1.6e-33 149.1 711 32.2
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 2.1e-33 148.7 832 29.4
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 1.4e-32 146.0 916 27.8
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 5.1e-32 144.1 903 28.3
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 3.3e-31 141.4 883 29.1
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 7.4e-31 140.2 412 34.2
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 1.3e-30 139.4 812 28.7
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 4.8e-30 137.5 746 29.2
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 1.4e-29 136.0 657 32.0
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.8e-29 135.6 825 27.0
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 9.1e-29 133.3 900 27.2
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 3.5e-28 131.3 963 29.4
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 2.2e-27 128.6 970 29.3
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 8.5e-27 126.7 822 27.4
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 1.5e-26 125.9 927 28.6
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 7.2e-26 123.6 889 28.2
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 6.1e-25 120.6 755 26.9
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 2.3e-24 118.6 749 26.8
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 2.3e-24 118.6 730 30.1
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 2.0e-23 115.5 892 26.9
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 2.6e-23 115.2 933 28.1
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 5.7e-23 114.0 738 28.3
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 1.3e-22 112.8 922 26.4
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 4.8e-22 110.9 793 28.5
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 8.2e-22 110.2 848 26.9
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 1.4e-21 109.4 700 29.1
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 2.4e-21 108.6 893 27.3
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 2.2e-19 102.1 879 29.9
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 1.9e-18 99.0 849 27.7
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 8.0e-17 93.6 819 29.2
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 8.8e-16 90.1 907 25.2
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 6.3e-14 84.0 729 25.5
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 6.3e-14 84.0 461 28.0
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 8.3e-14 83.6 805 25.6
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 5.9e-12 77.4 834 27.1
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 1.3e-11 76.3 623 27.6
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 1.3e-11 76.3 881 24.7
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 2.5e-10 72.0 237 35.0
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 3.2e-10 71.6 146 34.9
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 5.5e-10 70.9 937 25.3
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 3.6e-09 68.2 150 32.7
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 1.8e-08 65.9 553 29.5
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.3e-08 65.5 1062 24.6


User provided reference genes

Program Settings