Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-109 399.8 205 100.0
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.2e-97 358.6 205 90.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-82 309.7 205 81.0
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.9e-82 308.1 206 81.6
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.9e-82 308.1 206 81.6
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 8.5e-58 227.6 200 63.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 7.4e-54 214.5 204 58.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.1e-44 182.2 201 50.2
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 9.1e-44 181.0 131 72.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.6e-43 179.5 206 50.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 8.5e-42 174.5 201 47.8
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 8.5e-42 174.5 202 50.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.2e-41 172.6 206 48.1
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.6e-40 170.2 204 49.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.6e-40 170.2 206 48.5
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 7.9e-40 167.9 204 47.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.0e-39 167.5 204 48.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.0e-39 167.5 204 47.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-39 167.5 204 47.5
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.0e-39 166.0 203 45.8
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.4e-38 162.2 204 46.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.7e-38 161.8 204 48.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-37 160.6 204 48.5
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.7e-37 160.2 199 47.2
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.2e-37 159.8 205 48.8
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 4.8e-37 158.7 205 48.3
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.4e-36 156.4 204 47.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.3e-36 155.2 209 47.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.1e-33 147.5 197 46.7
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 1.1e-33 147.5 190 44.2
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.1e-33 147.5 191 42.4
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.9e-33 146.7 191 42.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-33 145.6 191 41.9
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.2e-32 144.1 192 41.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.1e-32 143.3 187 41.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.6e-32 142.5 192 40.6
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 4.7e-32 142.1 191 41.9
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 8.0e-32 141.4 189 40.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.0e-31 141.0 189 40.7
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.4e-31 140.6 197 41.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.8e-31 140.2 196 41.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 4.0e-31 139.0 191 44.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.0e-31 139.0 203 41.9
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 5.2e-31 138.7 189 42.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.2e-31 138.7 197 41.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 6.7e-31 138.3 191 41.9
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.7e-31 138.3 185 41.1
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.7e-31 138.3 190 41.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.8e-31 137.9 194 40.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.2e-30 137.5 191 41.4
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.5e-30 137.1 190 40.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.5e-30 137.1 189 40.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.0e-30 136.7 179 41.3
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.3e-30 136.0 195 40.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.4e-30 135.6 187 40.1
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.7e-30 135.2 203 38.4
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 7.5e-30 134.8 190 38.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.3e-29 134.0 187 39.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.3e-29 134.0 187 41.7
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.3e-29 134.0 186 40.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.2e-29 133.3 187 41.2
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 2.2e-29 133.3 191 40.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.8e-29 132.9 191 39.8
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 3.7e-29 132.5 190 39.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 4.8e-29 132.1 192 40.1
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.8e-29 132.1 187 42.2
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.2e-29 131.3 186 40.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 8.2e-29 131.3 189 41.3
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.1e-28 131.0 187 40.1
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.1e-28 131.0 188 39.9
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.4e-28 130.6 188 40.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-28 129.8 188 39.4
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.4e-28 129.8 187 40.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.1e-28 129.4 187 41.2
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 4.1e-28 129.0 187 39.6
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-28 128.6 179 41.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.3e-28 128.6 189 39.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 9.1e-28 127.9 190 37.4
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 9.1e-28 127.9 188 40.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.2e-27 127.5 189 40.2
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-27 127.5 187 39.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.2e-27 127.5 185 40.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.6e-27 127.1 154 53.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.0e-27 126.7 186 37.6
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.7e-27 126.3 191 39.8
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.7e-27 126.3 186 37.6
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.5e-27 125.9 120 56.7
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.5e-27 125.6 189 41.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.5e-27 125.6 186 39.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.5e-27 125.6 192 43.2
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.0e-26 124.4 197 38.6
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 1.3e-26 124.0 190 41.6
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.9e-26 122.9 187 38.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.0e-26 122.1 177 40.7
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.5e-26 121.7 187 40.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.1e-25 120.9 121 51.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.5e-25 120.6 188 39.4
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-25 120.2 171 43.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.5e-25 119.8 121 51.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.5e-25 119.8 181 40.9
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.2e-25 119.4 171 43.3
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 9.4e-25 117.9 192 39.1
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 9.4e-25 117.9 121 52.1
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.2e-24 117.5 121 51.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.2e-24 117.5 118 51.7
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.0e-24 114.8 146 45.9
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.4e-23 114.0 255 31.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-23 113.6 121 49.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.0e-23 112.5 126 47.6
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.0e-23 112.5 134 46.3
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.0e-23 112.5 121 49.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 8.8e-23 111.3 222 33.3
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.2e-22 110.9 121 48.8
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.2e-22 110.9 199 39.2
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-22 110.5 108 53.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 5.7e-22 108.6 191 34.6
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 7.5e-22 108.2 118 49.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.7e-21 107.1 191 34.0
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.8e-21 105.5 191 33.5
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.8e-21 105.5 193 34.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.1e-20 102.8 179 32.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.6e-19 100.5 130 43.1
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.0e-18 95.5 142 38.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-17 94.4 171 35.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-17 93.6 188 35.1
BcaB05g24541 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-16 90.1 60 81.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.1e-16 90.1 178 34.8
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 2.8e-16 89.7 154 35.7
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.7e-16 89.0 155 37.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.0e-11 73.6 150 30.7
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-11 73.6 147 34.7
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 2.7e-11 73.2 189 30.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 3.5e-11 72.8 188 29.8
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.5e-11 72.4 94 40.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-10 70.9 134 35.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.3e-10 70.1 139 36.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.3e-10 70.1 193 29.0
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.0e-10 68.9 145 33.1
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.3e-09 66.2 140 32.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 9.5e-09 64.7 71 52.1
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 4.7e-08 62.4 56 51.8
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-07 60.8 50 56.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 8.9e-07 58.2 79 44.3
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.5e-06 57.4 50 52.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.0e-06 57.0 50 52.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.4e-06 55.8 50 50.0


User provided reference genes

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