Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-40 169.1 80 100.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 8.7e-35 149.8 79 88.6
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 8.7e-35 149.8 79 88.6
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 3.7e-33 144.4 77 85.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 4.5e-31 137.5 64 98.4
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-26 122.1 77 74.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 7.4e-26 120.2 65 83.1
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.2e-25 118.6 63 84.1
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.2e-25 118.6 63 84.1
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.2e-25 118.6 63 84.1
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 2.2e-25 118.6 63 84.1
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 6.3e-25 117.1 65 80.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 6.3e-25 117.1 65 80.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 6.3e-25 117.1 65 80.0
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 6.3e-25 117.1 63 82.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.4e-24 115.9 63 82.5
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.1e-24 114.8 63 81.0
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.1e-24 114.8 63 82.5
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.2e-23 112.8 69 73.9
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 7.7e-23 110.2 63 76.2
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 7.7e-23 110.2 63 76.2
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.3e-22 109.4 63 76.2
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.3e-22 109.4 60 76.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 2.9e-22 108.2 67 70.1
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.8e-22 107.8 64 73.4
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.8e-22 107.8 64 73.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 3.8e-22 107.8 64 73.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 5.0e-22 107.5 64 73.4
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-21 106.3 64 70.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.1e-21 106.3 64 70.3
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.1e-21 106.3 64 70.3
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.4e-21 105.9 69 65.2
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.4e-21 105.9 64 70.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-21 105.9 64 71.9
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-21 105.9 64 70.3
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.9e-21 105.5 64 70.3
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.9e-21 105.5 64 70.3
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.9e-21 105.5 64 70.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.5e-21 105.1 64 68.8
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.5e-21 105.1 64 68.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 4.2e-21 104.4 64 70.3
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.5e-21 104.0 64 70.3
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 7.2e-21 103.6 64 68.8
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 9.4e-21 103.2 64 67.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 9.4e-21 103.2 64 68.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 9.4e-21 103.2 64 68.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.2e-20 102.8 64 68.8
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.2e-20 102.8 64 68.8
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-20 102.8 64 68.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.2e-20 102.8 64 70.3
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.6e-20 102.4 63 69.8
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.6e-20 102.4 64 67.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.6e-20 102.4 64 67.2
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.7e-20 101.7 64 64.1
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.7e-20 101.7 64 65.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.7e-20 101.7 64 67.2
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 3.6e-20 101.3 64 70.3
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 3.6e-20 101.3 64 65.6
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.7e-20 100.9 64 65.6
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 6.1e-20 100.5 64 67.2
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 6.1e-20 100.5 64 68.8
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 6.1e-20 100.5 64 68.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 7.9e-20 100.1 64 67.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 7.9e-20 100.1 68 61.8
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 7.9e-20 100.1 64 65.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.0e-19 99.8 64 65.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.0e-19 99.8 77 55.8
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.0e-19 99.8 64 65.6
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.4e-19 99.4 64 65.6
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.4e-19 99.4 66 62.1
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.8e-19 99.0 64 65.6
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.8e-19 99.0 64 67.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.8e-19 99.0 64 65.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.8e-19 99.0 64 64.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.8e-19 99.0 69 60.9
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.3e-19 98.6 63 66.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.3e-19 98.6 64 67.2
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.3e-19 98.6 64 67.2
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.3e-19 98.6 64 65.6
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.3e-19 98.6 64 65.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 3.0e-19 98.2 64 64.1
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.0e-19 98.2 64 65.6
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 3.0e-19 98.2 60 71.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 3.9e-19 97.8 64 64.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.9e-19 97.8 64 64.1
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.9e-19 97.8 64 64.1
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.9e-19 97.8 64 64.1
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 3.9e-19 97.8 64 64.1
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 5.1e-19 97.4 64 62.5
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.1e-19 97.4 64 62.5
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 5.1e-19 97.4 63 65.1
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 6.7e-19 97.1 64 65.6
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 6.7e-19 97.1 64 64.1
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 6.7e-19 97.1 64 65.6
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 8.8e-19 96.7 64 64.1
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.8e-19 96.7 64 64.1
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.8e-19 96.7 64 62.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.8e-19 96.7 64 62.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.1e-18 96.3 64 64.1
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.1e-18 96.3 64 64.1
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.5e-18 95.9 63 66.7
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.5e-18 95.9 64 64.1
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.5e-18 95.9 64 64.1
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.5e-18 95.9 64 64.1
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 3.3e-18 94.7 64 65.6
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.4e-18 93.6 64 60.9
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 7.4e-18 93.6 68 60.3
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.3e-17 90.5 61 62.3
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.1e-16 89.7 68 61.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.8e-16 89.0 65 60.0
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 4.1e-16 87.8 63 60.3
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.0e-16 87.0 51 70.6
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 9.1e-16 86.7 66 51.5
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.1e-13 79.7 62 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.9e-13 79.0 60 55.0
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.2e-13 77.0 50 64.0
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.2e-12 76.3 86 44.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 6.1e-12 73.9 59 50.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 9.7e-10 66.6 33 90.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.7e-09 65.9 38 73.7
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 3.7e-09 64.7 59 49.2
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 4.8e-09 64.3 60 46.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 7.0e-08 60.5 40 65.0
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 9.1e-08 60.1 48 52.1
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.9e-06 55.1 65 41.5
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 8.5e-06 53.5 30 70.0


User provided reference genes

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