Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1611.3 905 100.0
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 0.0e+00 1548.5 906 94.9
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 0.0e+00 1539.2 912 96.5
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 0.0e+00 1519.2 910 94.4
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 0.0e+00 1362.1 916 84.2
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 0.0e+00 1286.9 916 80.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 0.0e+00 1229.2 904 80.0
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 0.0e+00 1221.8 909 76.0
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 0.0e+00 1212.6 895 77.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 0.0e+00 1201.4 914 75.3
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 0.0e+00 1171.8 911 72.4
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 0.0e+00 1090.9 917 67.1
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 7.8e-297 1023.8 951 64.9
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.5e-263 913.3 950 58.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 2.7e-257 892.5 943 56.0
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 9.6e-255 884.0 945 56.2
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.7e-248 860.9 912 57.7
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 2.5e-247 859.4 946 57.0
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.5e-247 859.4 947 55.5
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 2.5e-247 859.4 949 55.3
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.1e-246 856.3 949 54.6
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 6.2e-246 854.7 950 56.7
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.4e-245 853.6 946 56.0
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 7.6e-244 847.8 943 58.2
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.2e-243 846.3 993 53.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.4e-243 844.7 956 54.6
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 2.4e-242 842.8 947 56.3
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 4.2e-242 842.0 958 56.5
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 6.0e-241 838.2 906 56.5
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.9e-240 835.5 935 53.8
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 9.6e-239 830.9 950 55.6
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 3.7e-238 828.9 940 56.0
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 8.2e-238 827.8 952 56.7
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 1.5e-236 823.5 972 54.8
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 2.2e-235 819.7 940 54.6
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.4e-234 817.0 937 55.2
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.4e-234 817.0 936 53.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 9.7e-231 804.3 930 52.3
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-230 803.5 944 52.3
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 8.2e-230 801.2 949 54.5
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.5e-228 797.0 928 54.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.5e-228 797.0 936 54.2
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.0e-228 796.6 888 56.1
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.0e-228 796.6 967 51.7
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.8e-227 792.3 966 51.4
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 8.5e-227 791.2 1086 46.7
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 8.5e-227 791.2 936 53.1
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.9e-226 790.0 953 54.7
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.9e-226 790.0 936 53.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.4e-226 787.7 893 54.5
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.2e-225 787.3 946 55.1
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.2e-225 787.3 888 52.8
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.7e-225 786.2 936 53.3
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.7e-225 786.2 941 53.2
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 4.6e-225 785.4 893 54.1
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.4e-224 783.9 938 53.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.0e-224 782.7 921 54.6
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.9e-224 782.3 942 50.8
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.9e-224 782.3 869 57.7
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.1e-224 781.9 965 51.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-223 779.6 945 51.7
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.2e-222 776.5 939 51.8
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 2.8e-222 776.2 924 52.5
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 2.8e-222 776.2 976 53.1
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 3.4e-220 769.2 889 55.6
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.7e-219 766.9 959 51.2
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 6.5e-219 765.0 890 51.5
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 3.2e-218 762.7 939 54.1
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 3.6e-217 759.2 960 53.8
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.9e-217 758.1 943 49.6
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.8e-216 756.9 958 52.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 5.1e-216 755.4 952 51.1
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.1e-215 754.2 952 52.2
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 3.3e-215 752.7 954 51.4
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 5.7e-215 751.9 858 54.2
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 7.4e-215 751.5 961 50.4
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 8.2e-214 748.0 945 51.9
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 3.1e-213 746.1 931 53.2
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 7.0e-213 745.0 937 50.4
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 5.0e-211 738.8 945 52.3
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 6.5e-211 738.4 926 47.6
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 8.0e-209 731.5 954 51.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 3.9e-208 729.2 954 51.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 3.9e-208 729.2 976 49.0
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 3.3e-207 726.1 935 51.1
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.2e-206 723.4 931 50.9
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.2e-204 717.6 1032 48.5
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 4.5e-204 715.7 929 50.3
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.7e-204 714.9 932 51.2
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.7e-201 706.4 953 49.5
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 3.3e-199 699.5 975 49.3
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.7e-199 698.0 851 52.8
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 9.8e-191 671.4 876 49.2
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.1e-178 631.3 795 53.1
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 3.4e-159 566.6 446 63.2
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 6.0e-156 555.8 956 41.7
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.1e-152 545.0 976 40.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.8e-152 544.3 952 41.4
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 7.6e-143 512.3 397 65.0
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 9.9e-135 485.3 702 48.1
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 8.7e-123 445.7 583 52.0
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.0e-119 434.5 618 44.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 4.2e-109 400.2 513 54.8
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.1e-108 396.4 643 48.2
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 8.5e-102 375.9 916 34.3
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 5.0e-86 323.6 622 40.2
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.2e-85 320.9 485 45.8
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.7e-79 301.2 267 59.2
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.9e-62 244.6 261 51.3
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.3e-61 241.1 192 63.5
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 4.3e-61 240.7 941 27.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.5e-58 232.3 261 49.0
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.8e-58 230.3 336 50.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.1e-48 199.5 1149 27.5
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 2.7e-47 194.9 309 45.3
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.6e-47 194.1 402 40.0
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 7.8e-47 193.4 276 48.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.1e-46 190.7 323 43.7
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.2e-42 179.5 370 40.0
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 2.7e-39 168.3 92 96.7
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 3.9e-38 164.5 92 94.6
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 2.1e-28 132.1 99 62.6
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 2.1e-28 132.1 654 25.8
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.4e-27 128.6 324 38.9
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 5.8e-26 124.0 114 56.1
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-24 119.8 108 62.0
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.4e-24 119.4 86 72.1
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.4e-24 119.4 746 26.5
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 4.2e-24 117.9 216 39.4
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.3e-24 116.7 84 72.6
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 9.3e-24 116.7 111 54.1
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.3e-24 116.7 135 50.4
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.6e-23 115.9 133 48.1
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.8e-20 105.1 341 36.1
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.3e-16 90.1 115 49.6
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 3.0e-14 85.1 71 62.0
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.5e-13 82.8 252 36.9
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.1e-11 75.1 58 69.0
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 9.0e-11 73.6 205 28.3
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.4e-10 71.6 55 69.1
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.4e-10 71.6 70 60.0
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.2e-09 68.9 58 67.2
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.4e-08 66.2 123 44.7
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 4.2e-08 64.7 58 53.4
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.7e-07 62.0 78 47.4
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.0e-06 60.1 46 67.4
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 5.1e-06 57.8 66 48.5


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