Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15220 Brassica napus HOM05D003647 ORTHO05D004182 1.1e-75 286.6 148 100.0
BraA02t06585Z Brassica rapa HOM05D003647 ORTHO05D004182 2.2e-71 272.3 168 87.5
Sp5g23700 Schrenkiella parvula HOM05D003647 ORTHO05D004182 1.8e-57 226.1 171 73.7
A07p35030 Brassica napus HOM05D003647 ORTHO05D004182 2.2e-55 219.2 170 72.4
Thhalv10019225m.g Eutrema salsugineum HOM05D003647 ORTHO05D004182 2.2e-55 219.2 170 71.8
BolC6t39301H Brassica oleracea HOM05D003647 ORTHO05D004182 4.8e-55 218.0 170 71.8
BcaC08g46310 Brassica carinata HOM05D003647 ORTHO05D004182 6.3e-55 217.6 170 71.8
BcaB03g15432 Brassica carinata HOM05D003647 ORTHO05D004182 7.7e-53 210.7 168 72.0
A07p31910 Brassica napus HOM05D003647 ORTHO05D004182 1.3e-52 209.9 168 71.4
BraA07t30819Z Brassica rapa HOM05D003647 ORTHO05D004182 1.3e-52 209.9 168 71.4
AL2G27500 Arabidopsis lyrata HOM05D003647 ORTHO05D004182 6.8e-49 197.6 171 67.3
AT1G68590 Arabidopsis thaliana HOM05D003647 ORTHO05D004182 2.6e-48 195.7 172 65.7
Carub.0002s1513 Capsella rubella HOM05D003647 ORTHO05D004182 3.7e-47 191.8 171 64.9
BcaC03g14972 Brassica carinata HOM05D003647 ORTHO05D004182 8.3e-47 190.7 168 65.5
BolC2t08587H Brassica oleracea HOM05D003647 ORTHO05D004182 8.3e-47 190.7 168 65.5
CARHR061390 Cardamine hirsuta HOM05D003647 ORTHO05D004182 1.1e-46 190.3 170 65.3
BcaB03g15836 Brassica carinata HOM05D003647 ORTHO05D004182 1.4e-46 189.9 170 67.1
C02p25030 Brassica napus HOM05D003647 ORTHO05D004182 4.1e-46 188.3 168 64.9
THA.LOC104821946 Tarenaya hassleriana HOM05D003647 ORTHO05D004182 1.3e-36 156.8 184 53.3
Aa31sc179G40 Aethionema arabicum HOM05D003647 ORTHO05D004182 5.0e-36 154.8 178 55.1
C06p37480 Brassica napus HOM05D003647 ORTHO05D004182 1.6e-34 149.8 106 70.8
BolC6t38850H Brassica oleracea HOM05D003647 ORTHO05D004182 1.6e-34 149.8 106 70.8
BcaC08g45954 Brassica carinata HOM05D003647 ORTHO05D004182 6.8e-33 144.4 95 73.7
Ciclev10032902m.g Citrus clementina HOM05D003647 ORTHO05D004182 3.2e-30 135.6 175 48.0
Manes.06G070400 Manihot esculenta HOM05D003647 ORTHO05D004182 1.6e-29 133.3 189 44.4
Cpa.g.sc1.192 Carica papaya HOM05D003647 ORTHO05D004182 3.5e-29 132.1 169 47.9
Sabra10G0096700 Salix brachista HOM05D003647 ORTHO05D004182 4.6e-29 131.7 182 44.5
Potri.008G118700 Populus trichocarpa HOM05D003647 ORTHO05D004182 6.0e-29 131.3 167 47.3
Atru.chr11.1298 Acer truncatum HOM05D003647 ORTHO05D004182 1.0e-28 130.6 166 47.6
Potri.010G127300 Populus trichocarpa HOM05D003647 ORTHO05D004182 3.9e-28 128.6 179 41.9
Sabra08G0090100 Salix brachista HOM05D003647 ORTHO05D004182 1.5e-27 126.7 191 42.4
Duzib248G1227 Durio zibethinus HOM05D003647 ORTHO05D004182 1.9e-27 126.3 165 45.5
Thecc.02G357900 Theobroma cacao HOM05D003647 ORTHO05D004182 9.5e-27 124.0 94 61.7
Oeu003405.1 Olea europaea HOM05D003647 ORTHO05D004182 1.6e-26 123.2 154 46.1
TAR371G0244 Trochodendron aralioides HOM05D003647 ORTHO05D004182 2.1e-26 122.9 91 62.6
Solyc05g009570.3 Solanum lycopersicum HOM05D003647 ORTHO05D004182 3.6e-26 122.1 167 45.5
FAN09G1508 Fragaria x ananassa HOM05D003647 ORTHO05D004182 4.7e-26 121.7 146 47.3
Gorai.005G138300 Gossypium raimondii HOM05D003647 ORTHO05D004182 8.0e-26 120.9 175 46.9
Hma1.2p1_0136F.1_g062190 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 8.0e-26 120.9 126 51.6
Nitab4.5_0004895g0090 Nicotiana tabacum HOM05D003647 ORTHO05D004182 8.0e-26 120.9 175 45.1
Gohir.A03G097501 Gossypium hirsutum HOM05D003647 ORTHO05D004182 1.1e-25 120.6 175 46.9
FAN14G0605 Fragaria x ananassa HOM05D003647 ORTHO05D004182 1.4e-25 120.2 146 45.9
FAN14G5211 Fragaria x ananassa HOM05D003647 ORTHO05D004182 1.4e-25 120.2 146 45.9
HanXRQChr08g0214241 Helianthus annuus HOM05D003647 ORTHO05D004182 1.4e-25 120.2 140 48.6
COL.COLO4_07898 Corchorus olitorius HOM05D003647 ORTHO05D004182 3.1e-25 119.0 91 61.5
PSO017G5162 Papaver somniferum HOM05D003647 ORTHO05D004182 3.1e-25 119.0 100 58.0
QL01p043998 Quercus lobata HOM05D003647 ORTHO05D004182 3.1e-25 119.0 191 39.8
Sopen05g005380 Solanum pennellii HOM05D003647 ORTHO05D004182 3.1e-25 119.0 167 44.9
Gohir.D02G115700 Gossypium hirsutum HOM05D003647 ORTHO05D004182 4.0e-25 118.6 169 46.2
MD09G1087300 Malus domestica HOM05D003647 ORTHO05D004182 4.0e-25 118.6 121 47.9
Manes.14G099900 Manihot esculenta HOM05D003647 ORTHO05D004182 4.0e-25 118.6 190 40.0
Nitab4.5_0003823g0030 Nicotiana tabacum HOM05D003647 ORTHO05D004182 4.0e-25 118.6 175 44.6
FAN02G1916 Fragaria x ananassa HOM05D003647 ORTHO05D004182 5.2e-25 118.2 144 44.4
Peaxi162Scf00382g00119 Petunia axillaris HOM05D003647 ORTHO05D004182 5.2e-25 118.2 176 45.5
Phvul.008G005100 Phaseolus vulgaris HOM05D003647 ORTHO05D004182 6.8e-25 117.9 98 57.1
PGSC0003DMG401012965 Solanum tuberosum HOM05D003647 ORTHO05D004182 6.8e-25 117.9 167 44.9
Aqoxy3G00334 Aquilegia oxysepala HOM05D003647 ORTHO05D004182 8.9e-25 117.5 150 45.3
FvH4_6g45210 Fragaria vesca HOM05D003647 ORTHO05D004182 8.9e-25 117.5 147 46.3
TAR629G0906 Trochodendron aralioides HOM05D003647 ORTHO05D004182 8.9e-25 117.5 101 56.4
FAN05G5367 Fragaria x ananassa HOM05D003647 ORTHO05D004182 1.2e-24 117.1 140 45.7
Prupe.3G238100 Prunus persica HOM05D003647 ORTHO05D004182 1.2e-24 117.1 128 47.7
Sed0015390 Sechium edule HOM05D003647 ORTHO05D004182 1.2e-24 117.1 110 50.9
Lj1g0016347 Lotus japonicus HOM05D003647 ORTHO05D004182 1.5e-24 116.7 101 55.4
MD17G1075600 Malus domestica HOM05D003647 ORTHO05D004182 1.5e-24 116.7 120 50.8
PSO478G1471 Papaver somniferum HOM05D003647 ORTHO05D004182 1.5e-24 116.7 90 61.1
Medtr6g090520 Medicago truncatula HOM05D003647 ORTHO05D004182 2.0e-24 116.3 159 44.7
Hma1.2p1_0406F.1_g146130 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 2.6e-24 115.9 191 39.3
Sc10g0001240 Simmondsia chinensis HOM05D003647 ORTHO05D004182 2.6e-24 115.9 90 58.9
TPR.G33541 Trifolium pratense HOM05D003647 ORTHO05D004182 2.6e-24 115.9 165 43.6
ATR0564G434 Amborella trichopoda HOM05D003647 ORTHO05D004182 3.4e-24 115.5 90 58.9
CAN.G995.4 Capsicum annuum HOM05D003647 ORTHO05D004182 3.4e-24 115.5 108 52.8
CsaV3_3G020570 Cucumis sativus L. HOM05D003647 ORTHO05D004182 3.4e-24 115.5 109 53.2
Migut.E00323 Erythranthe guttata HOM05D003647 ORTHO05D004182 3.4e-24 115.5 165 41.8
Nn4g23801 Nelumbo nucifera HOM05D003647 ORTHO05D004182 3.4e-24 115.5 128 45.3
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.4e-24 115.5 166 42.8
Cc07_g08870 Coffea canephora HOM05D003647 ORTHO05D004182 4.4e-24 115.2 154 44.2
MBI07_g40356_MAGBIO Magnolia biondii HOM05D003647 ORTHO05D004182 4.4e-24 115.2 90 58.9
PGSC0003DMG400019583 Solanum tuberosum HOM05D003647 ORTHO05D004182 4.4e-24 115.2 108 51.9
ClCG05G011680 Citrullus lanatus HOM05D003647 ORTHO05D004182 5.8e-24 114.8 128 47.7
Glyma.08G364600 Glycine max HOM05D003647 ORTHO05D004182 5.8e-24 114.8 140 47.9
Rhsim09G0110100 Rhododendron simsii HOM05D003647 ORTHO05D004182 5.8e-24 114.8 84 63.1
CiPaw.04G041300 Carya illinoinensis HOM05D003647 ORTHO05D004182 7.5e-24 114.4 89 59.6
MELO3C023788.2 Cucumis melo HOM05D003647 ORTHO05D004182 7.5e-24 114.4 154 43.5
SGA_v2.0_scaffold170G38750 Striga asiatica HOM05D003647 ORTHO05D004182 7.5e-24 114.4 97 55.7
TWI74G1467 Tripterygium wilfordii HOM05D003647 ORTHO05D004182 7.5e-24 114.4 90 57.8
GSVIVG01031053001 Vitis vinifera HOM05D003647 ORTHO05D004182 7.5e-24 114.4 89 58.4
CDE05G0272 Ceratophyllum demersum HOM05D003647 ORTHO05D004182 9.8e-24 114.0 175 43.4
Nitab4.5_0002489g0040 Nicotiana tabacum HOM05D003647 ORTHO05D004182 9.8e-24 114.0 108 51.9
SalBow8G5571 Salvia bowleyana HOM05D003647 ORTHO05D004182 9.8e-24 114.0 172 43.0
arahy.Tifrunner.gnm1.ann1.BF2R1L Arachis hypogaea HOM05D003647 ORTHO05D004182 1.3e-23 113.6 146 45.9
arahy.Tifrunner.gnm1.ann1.Z01VGZ Arachis hypogaea HOM05D003647 ORTHO05D004182 1.3e-23 113.6 146 45.9
CANSAT64G0461 Cannabis sativa HOM05D003647 ORTHO05D004182 1.3e-23 113.6 145 44.1
Oeu036198.1 Olea europaea HOM05D003647 ORTHO05D004182 1.3e-23 113.6 182 41.8
Peaxi162Scf00104g00811 Petunia axillaris HOM05D003647 ORTHO05D004182 1.3e-23 113.6 133 48.1
MSTRG.823 Avicennia marina HOM05D003647 ORTHO05D004182 1.7e-23 113.2 94 58.5
Lj1g0025351 Lotus japonicus HOM05D003647 ORTHO05D004182 1.7e-23 113.2 90 57.8
Peaxi162Scf00814g00229 Petunia axillaris HOM05D003647 ORTHO05D004182 1.7e-23 113.2 89 58.4
vmacro10545 Vaccinium macrocarpon HOM05D003647 ORTHO05D004182 2.2e-23 112.8 187 41.2
Dinv21111 Davidia involucrata HOM05D003647 ORTHO05D004182 2.9e-23 112.5 187 38.0
ECA233G1351 Erigeron canadensis HOM05D003647 ORTHO05D004182 2.9e-23 112.5 165 43.0
Gorai.007G180900 Gossypium raimondii HOM05D003647 ORTHO05D004182 2.9e-23 112.5 90 57.8
SEGI_30525 Sequoiadendron giganteum HOM05D003647 ORTHO05D004182 2.9e-23 112.5 83 62.7
DCAR_017204 Daucus carota HOM05D003647 ORTHO05D004182 3.7e-23 112.1 83 61.4
Dinv33936 Davidia involucrata HOM05D003647 ORTHO05D004182 3.7e-23 112.1 150 43.3
Actinidia36314 Actinidia chinensis HOM05D003647 ORTHO05D004182 4.9e-23 111.7 150 44.7
Ah.10g037610 Amaranthus hybridus HOM05D003647 ORTHO05D004182 4.9e-23 111.7 183 41.0
Lj4P194T26 Lonicera japonica HOM05D003647 ORTHO05D004182 4.9e-23 111.7 83 60.2
Lalb_Chr17g0335771 Lupinus albus HOM05D003647 ORTHO05D004182 4.9e-23 111.7 160 42.5
Nn3g17798 Nelumbo nucifera HOM05D003647 ORTHO05D004182 4.9e-23 111.7 188 38.3
CSS0044113 Camellia sinensis var. sinensis HOM05D003647 ORTHO05D004182 6.4e-23 111.3 157 40.8
AUR62014523 Chenopodium quinoa HOM05D003647 ORTHO05D004182 6.4e-23 111.3 183 41.5
Psat1g046480 Pisum sativum HOM05D003647 ORTHO05D004182 6.4e-23 111.3 157 43.9
AUR62008980 Chenopodium quinoa HOM05D003647 ORTHO05D004182 8.3e-23 110.9 183 41.0
Eucgr.J01498 Eucalyptus grandis HOM05D003647 ORTHO05D004182 8.3e-23 110.9 113 47.8
DCAR_026724 Daucus carota HOM05D003647 ORTHO05D004182 1.1e-22 110.5 172 43.0
MD17G1076100 Malus domestica HOM05D003647 ORTHO05D004182 1.1e-22 110.5 133 43.6
CSS0032363 Camellia sinensis var. sinensis HOM05D003647 ORTHO05D004182 1.4e-22 110.2 90 55.6
Cc11_g10360 Coffea canephora HOM05D003647 ORTHO05D004182 1.4e-22 110.2 182 41.2
COL.COLO4_05466 Corchorus olitorius HOM05D003647 ORTHO05D004182 1.4e-22 110.2 153 43.8
Hma1.2p1_0550F.1_g177350 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 1.4e-22 110.2 94 53.2
Hma1.2p1_3581F.1_g336846 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 1.4e-22 110.2 94 53.2
QL02p051926 Quercus lobata HOM05D003647 ORTHO05D004182 1.4e-22 110.2 183 39.3
CSS0003555 Camellia sinensis var. sinensis HOM05D003647 ORTHO05D004182 1.9e-22 109.8 76 63.2
CSS0025981 Camellia sinensis var. sinensis HOM05D003647 ORTHO05D004182 1.9e-22 109.8 76 63.2
Hma1.2p1_0550F.1_g177340 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 3.2e-22 109.0 93 53.8
Hma1.2p1_3581F.1_g336843 Hydrangea macrophylla HOM05D003647 ORTHO05D004182 3.2e-22 109.0 93 53.8
Gohir.D11G169200 Gossypium hirsutum HOM05D003647 ORTHO05D004182 4.1e-22 108.6 152 44.7
RcHm_v2.0_Chr2g0162921 Rosa chinensis HOM05D003647 ORTHO05D004182 4.1e-22 108.6 156 43.6
Sopen03g006970 Solanum pennellii HOM05D003647 ORTHO05D004182 5.4e-22 108.2 179 40.8
Thecc.04G135800 Theobroma cacao HOM05D003647 ORTHO05D004182 7.0e-22 107.8 151 43.7
Pp3c16_2540 Physcomitrium patens HOM05D003647 ORTHO05D004182 9.2e-22 107.5 91 56.0
Lsat_1_v5_gn_9_32940 Lactuca sativa HOM05D003647 ORTHO05D004182 1.2e-21 107.1 138 42.8
Solyc03g034190.3 Solanum lycopersicum HOM05D003647 ORTHO05D004182 1.2e-21 107.1 179 40.8
BcaC04g18940 Brassica carinata HOM05D003647 ORTHO05D004182 1.6e-21 106.7 85 58.8
A10p23270 Brassica napus HOM05D003647 ORTHO05D004182 1.6e-21 106.7 92 55.4
BraA10t44395Z Brassica rapa HOM05D003647 ORTHO05D004182 1.6e-21 106.7 92 55.4
Gohir.A11G162950 Gossypium hirsutum HOM05D003647 ORTHO05D004182 1.6e-21 106.7 150 44.7
Ah.16g101870 Amaranthus hybridus HOM05D003647 ORTHO05D004182 2.1e-21 106.3 174 40.2
unitig_22.g6874 Utricularia gibba HOM05D003647 ORTHO05D004182 2.1e-21 106.3 81 61.7
Duzib268G1185 Durio zibethinus HOM05D003647 ORTHO05D004182 2.7e-21 105.9 120 47.5
CARHR197570 Cardamine hirsuta HOM05D003647 ORTHO05D004182 3.5e-21 105.5 91 52.7
Ciclev10012871m.g Citrus clementina HOM05D003647 ORTHO05D004182 3.5e-21 105.5 129 42.6
Sp6g28360 Schrenkiella parvula HOM05D003647 ORTHO05D004182 4.6e-21 105.1 91 52.7
Zm00001eb424280 Zea mays HOM05D003647 ORTHO05D004182 4.6e-21 105.1 103 47.6
PGR042G0665 Punica granatum HOM05D003647 ORTHO05D004182 6.0e-21 104.8 185 37.3
vmacro05565 Vaccinium macrocarpon HOM05D003647 ORTHO05D004182 6.0e-21 104.8 166 38.0
EL10Ac2g04587 Beta vulgaris HOM05D003647 ORTHO05D004182 7.8e-21 104.4 174 42.0
C09p61340 Brassica napus HOM05D003647 ORTHO05D004182 7.8e-21 104.4 141 41.8
Nitab4.5_0002207g0110 Nicotiana tabacum HOM05D003647 ORTHO05D004182 7.8e-21 104.4 174 39.1
Pp3c6_19070 Physcomitrium patens HOM05D003647 ORTHO05D004182 7.8e-21 104.4 91 52.7
Hund16136 Selenicereus undatus HOM05D003647 ORTHO05D004182 7.8e-21 104.4 171 40.4
Actinidia16637 Actinidia chinensis HOM05D003647 ORTHO05D004182 1.0e-20 104.0 179 39.7
Mapoly0026s0019 Marchantia polymorpha HOM05D003647 ORTHO05D004182 1.0e-20 104.0 81 58.0
HPP92_006143 Vanilla planifolia HOM05D003647 ORTHO05D004182 1.0e-20 104.0 180 39.4
BolC9t58975H Brassica oleracea HOM05D003647 ORTHO05D004182 1.3e-20 103.6 143 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2845 Anthoceros agrestis HOM05D003647 ORTHO05D004182 2.3e-20 102.8 78 59.0
Thhalv10014781m.g Eutrema salsugineum HOM05D003647 ORTHO05D004182 2.3e-20 102.8 113 47.8
AL6G26600 Arabidopsis lyrata HOM05D003647 ORTHO05D004182 3.0e-20 102.4 91 51.6
ECA236G0613 Erigeron canadensis HOM05D003647 ORTHO05D004182 3.0e-20 102.4 151 41.7
HanXRQChr12g0376481 Helianthus annuus HOM05D003647 ORTHO05D004182 3.9e-20 102.1 160 41.2
Nitab4.5_0001569g0080 Nicotiana tabacum HOM05D003647 ORTHO05D004182 3.9e-20 102.1 179 39.7
Os04g0461100 Oryza sativa ssp. japonica HOM05D003647 ORTHO05D004182 5.1e-20 101.7 95 48.4
Zm00001eb080680 Zea mays HOM05D003647 ORTHO05D004182 5.1e-20 101.7 165 38.8
Sed0001957 Sechium edule HOM05D003647 ORTHO05D004182 6.6e-20 101.3 177 39.5
Aa31LG11G13820 Aethionema arabicum HOM05D003647 ORTHO05D004182 8.6e-20 100.9 148 39.2
Carub.0006s1391 Capsella rubella HOM05D003647 ORTHO05D004182 8.6e-20 100.9 113 46.9
Cpa.g.sc179.3 Carica papaya HOM05D003647 ORTHO05D004182 2.5e-19 99.4 166 37.3
Ca_25588_v3 Cicer arietinum L. HOM05D003647 ORTHO05D004182 2.5e-19 99.4 73 63.0
MSTRG.16882 Avicennia marina HOM05D003647 ORTHO05D004182 3.3e-19 99.0 143 42.0
Lj3P1017T47 Lonicera japonica HOM05D003647 ORTHO05D004182 3.3e-19 99.0 74 60.8
THA.LOC104820978 Tarenaya hassleriana HOM05D003647 ORTHO05D004182 3.3e-19 99.0 142 40.1
AT5G15760 Arabidopsis thaliana HOM05D003647 ORTHO05D004182 4.3e-19 98.6 162 40.7
Nitab4.5_0005199g0020 Nicotiana tabacum HOM05D003647 ORTHO05D004182 3.6e-18 95.5 74 58.1
Potri.004G101000 Populus trichocarpa HOM05D003647 ORTHO05D004182 3.6e-18 95.5 155 38.1
SMO361G0307 Selaginella moellendorffii HOM05D003647 ORTHO05D004182 4.7e-18 95.1 76 55.3
SGA_v2.0_scaffold32G13263 Striga asiatica HOM05D003647 ORTHO05D004182 1.1e-17 94.0 111 43.2
unitig_21.g20820 Utricularia gibba HOM05D003647 ORTHO05D004182 1.4e-17 93.6 113 43.4
MBI12_g41871_MAGBIO Magnolia biondii HOM05D003647 ORTHO05D004182 1.8e-17 93.2 55 69.1
SalBow6G4895 Salvia bowleyana HOM05D003647 ORTHO05D004182 1.8e-17 93.2 162 35.8
Manes.01G109300 Manihot esculenta HOM05D003647 ORTHO05D004182 2.0e-16 89.7 170 35.3
Sabra04G0079100 Salix brachista HOM05D003647 ORTHO05D004182 3.4e-16 89.0 155 36.8
Lsat_1_v5_gn_3_38140 Lactuca sativa HOM05D003647 ORTHO05D004182 1.3e-15 87.0 47 72.3
Oeu050369.1 Olea europaea HOM05D003647 ORTHO05D004182 1.4e-14 83.6 159 37.7
Migut.B00118 Erythranthe guttata HOM05D003647 ORTHO05D004182 2.4e-06 56.2 70 42.9
Cre02.g083950 Chlamydomonas reinhardtii HOM05D003647 ORTHO05D004182 5.4e-06 55.1 42 47.6
BcaC08g45951 Brassica carinata HOM05D003647 ORTHO05D004182 9.2e-06 54.3 110 40.9


User provided reference genes

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