Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 2.3e-58 228.8 126 100.0
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 2.0e-57 225.7 126 98.4
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 6.4e-56 220.7 126 96.8
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.1e-55 219.9 126 96.8
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.4e-31 139.8 81 90.1
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 7.1e-31 137.5 88 73.9
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 7.1e-31 137.5 88 73.9
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 7.1e-31 137.5 88 73.9
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 3.0e-29 132.1 81 87.7
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 3.9e-29 131.7 88 79.5
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 9.6e-28 127.1 81 72.8
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 2.1e-27 125.9 81 71.6
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 5.1e-21 104.8 57 75.4
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 5.6e-20 101.3 48 91.7
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 6.2e-19 97.8 52 76.9
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 6.2e-19 97.8 92 62.0
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 1.8e-18 96.3 47 83.0
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.6e-14 81.6 44 72.7
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.6e-14 81.6 44 70.5
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 2.3e-13 79.3 55 65.5
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 3.9e-13 78.6 52 61.5
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 4.3e-12 75.1 52 59.6
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.3e-11 73.6 52 57.7
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.6e-11 73.2 54 53.7
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.6e-11 72.0 43 62.8
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 6.2e-11 71.2 52 51.9
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 6.2e-11 71.2 43 62.8
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 8.1e-11 70.9 52 59.6
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.1e-10 70.5 52 53.8
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 1.4e-10 70.1 56 53.6
CARHR026040 Cardamine hirsuta HOM05D007757 ORTHO05D009619 2.4e-10 69.3 45 66.7
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.4e-10 69.3 48 54.2
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 4.0e-10 68.6 102 34.3
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 4.0e-10 68.6 52 50.0
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 9.0e-10 67.4 45 64.4
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 9.0e-10 67.4 57 50.9
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.2e-09 67.0 45 53.3
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.2e-09 67.0 45 62.2
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 2.0e-09 66.2 44 54.5
Carub.0001s2507 Capsella rubella HOM05D007757 ORTHO05D009619 2.6e-09 65.9 41 68.3
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 3.4e-09 65.5 46 52.2
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 3.4e-09 65.5 44 56.8
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 4.5e-09 65.1 53 49.1
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 4.5e-09 65.1 50 52.0
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 4.5e-09 65.1 45 51.1
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 5.8e-09 64.7 54 51.9
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 5.8e-09 64.7 54 51.9
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 5.8e-09 64.7 41 58.5
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 7.6e-09 64.3 44 50.0
BcaC05g26671 Brassica carinata HOM05D007757 ORTHO05D009619 1.3e-08 63.5 59 52.5
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.3e-08 63.5 53 49.1
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.7e-08 63.2 89 37.1
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 2.2e-08 62.8 44 61.4
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 2.2e-08 62.8 41 53.7
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 2.2e-08 62.8 56 51.8
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.2e-08 62.8 56 51.8
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 2.2e-08 62.8 56 51.8
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 2.2e-08 62.8 50 54.0
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 2.2e-08 62.8 56 53.6
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 2.9e-08 62.4 41 56.1
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.9e-08 62.4 44 61.4
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 4.9e-08 61.6 50 48.0
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.9e-08 61.6 56 51.8
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 6.4e-08 61.2 53 49.1
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 6.4e-08 61.2 41 53.7
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 6.4e-08 61.2 41 53.7
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.1e-07 60.5 48 47.9
BraA09t39435Z Brassica rapa HOM05D007757 ORTHO05D009619 1.4e-07 60.1 58 50.0
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 1.4e-07 60.1 43 51.2
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 1.9e-07 59.7 48 60.4
BcaC05g26463 Brassica carinata HOM05D007757 ORTHO05D009619 2.4e-07 59.3 44 56.8
A09p39320 Brassica napus HOM05D007757 ORTHO05D009619 2.4e-07 59.3 44 56.8
C05p25050 Brassica napus HOM05D007757 ORTHO05D009619 2.4e-07 59.3 44 56.8
BolC5t31238H Brassica oleracea HOM05D007757 ORTHO05D009619 2.4e-07 59.3 44 56.8
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.4e-07 59.3 57 45.6
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 9.3e-07 57.4 43 48.8
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 9.3e-07 57.4 43 48.8


User provided reference genes

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