Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-163 579.3 317 100.0
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.8e-155 550.4 317 95.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-154 550.1 317 94.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 4.8e-153 544.7 317 94.3
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 8.5e-150 533.9 319 94.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.4e-146 521.9 317 92.1
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.1e-140 502.7 319 87.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 3.0e-131 472.2 311 87.8
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 9.8e-130 467.2 313 78.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 3.7e-129 465.3 317 83.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 3.1e-123 445.7 312 83.3
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 3.1e-123 445.7 312 83.3
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.0e-123 445.3 312 84.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.0e-123 445.3 312 84.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.9e-113 412.5 314 73.9
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.1e-112 410.6 314 78.0
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.2e-105 386.3 318 75.8
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.6e-103 378.6 315 73.3
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.6e-79 298.9 325 60.6
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.8e-68 263.1 300 60.3
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.0e-66 256.9 300 56.7
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.9e-63 245.0 300 51.0
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 7.9e-63 245.0 306 55.9
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.3e-62 243.4 304 53.6
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-61 241.1 301 52.2
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 3.7e-60 236.1 307 53.1
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-59 233.4 299 49.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.4e-59 233.4 302 52.6
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 3.1e-51 206.5 302 49.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.2e-50 204.5 295 48.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.0e-46 191.4 337 43.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.4e-46 191.0 335 41.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.6e-45 186.8 336 43.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.8e-44 183.3 338 45.0
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 8.2e-44 181.8 342 44.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.1e-43 181.4 339 40.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.4e-43 181.0 332 42.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.0e-43 178.7 330 40.3
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.6e-42 177.6 333 42.0
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.9e-42 175.6 330 39.7
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 5.9e-42 175.6 332 43.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-41 174.5 326 41.7
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.7e-39 166.8 331 36.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.5e-37 161.0 318 40.9
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 4.8e-36 156.0 336 36.3
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-35 154.1 322 37.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.8e-35 154.1 324 40.7
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 5.3e-35 152.5 332 41.9
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.1e-35 151.8 333 41.4
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 9.1e-35 151.8 315 35.6
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 9.1e-35 151.8 334 40.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.0e-34 150.6 319 39.2
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 4.5e-34 149.4 314 36.6
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.7e-34 148.7 323 33.7
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.0e-33 146.0 333 37.8
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 8.5e-33 145.2 333 37.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-32 144.8 330 40.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.9e-32 144.1 335 32.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 5.5e-32 142.5 348 37.4
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.6e-31 141.0 330 40.6
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.7e-31 140.2 337 32.9
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.7e-31 139.4 338 38.8
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 4.7e-31 139.4 319 36.1
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.0e-30 138.3 338 37.9
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.4e-30 137.9 319 33.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.8e-30 137.5 319 32.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.5e-29 134.4 345 39.7
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.4e-29 133.3 317 37.9
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 3.4e-29 133.3 309 35.3
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 7.5e-29 132.1 339 33.0
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.8e-29 131.7 327 35.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.7e-28 131.0 325 32.9
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.2e-28 130.6 341 39.9
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.2e-28 130.6 319 37.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.7e-28 129.8 326 31.6
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.7e-28 129.8 326 30.4
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 3.7e-28 129.8 328 37.5
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.7e-28 129.8 341 39.9
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 4.8e-28 129.4 328 33.5
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.3e-28 129.0 318 31.8
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.3e-28 129.0 343 40.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.3e-28 128.6 341 39.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.3e-28 128.6 326 31.3
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-27 127.5 326 29.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.8e-27 127.5 337 38.6
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-27 127.1 337 32.6
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.1e-27 126.7 324 41.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 4.1e-27 126.3 339 37.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.1e-27 126.3 318 31.1
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 5.4e-27 125.9 305 37.7
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.1e-27 125.2 339 40.4
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-26 124.8 340 35.3
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.7e-26 123.6 329 43.2
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 4.5e-26 122.9 313 39.3
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.9e-26 122.5 329 40.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 5.9e-26 122.5 326 41.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 7.7e-26 122.1 327 42.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.3e-25 121.3 330 30.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.7e-25 120.9 320 40.6
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.7e-25 120.9 344 31.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.7e-25 120.9 320 38.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.9e-24 117.5 324 39.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.9e-24 117.5 313 30.7
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.2e-24 116.3 312 40.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 5.5e-24 115.9 313 34.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 4.7e-23 112.8 309 33.7
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-22 111.3 287 35.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.3e-22 110.5 315 33.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 4.0e-22 109.8 187 41.7
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 6.8e-22 109.0 315 33.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.3e-20 102.1 294 28.9
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 8.3e-20 102.1 329 28.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.4e-19 101.3 319 28.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.1e-19 99.8 313 29.4
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-18 98.2 188 42.6
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.8e-18 95.5 323 32.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.0e-17 95.1 212 35.4
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.3e-17 94.7 195 36.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.7e-17 94.4 286 31.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 8.6e-17 92.0 320 27.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.1e-16 91.7 326 30.1
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.1e-16 91.7 322 30.7
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.9e-16 90.9 315 27.0
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.3e-16 90.1 302 36.4
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.3e-16 89.7 311 36.3
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 5.6e-16 89.4 314 31.2
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-15 87.8 319 30.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.6e-15 87.8 315 36.2
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 3.4e-13 80.1 270 38.9
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 9.8e-13 78.6 267 31.1
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-12 78.2 303 28.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 6.4e-12 75.9 328 35.7
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.6e-10 71.2 319 25.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.6e-10 71.2 164 32.9
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-10 70.9 78 44.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.9e-09 66.6 181 31.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 6.6e-09 65.9 69 44.9
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.1e-08 65.1 282 28.0
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.5e-08 64.7 310 32.9
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.5e-08 63.9 178 29.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.3e-08 63.2 169 32.0
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 5.6e-08 62.8 252 35.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.3e-08 62.4 320 26.2
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.5e-08 62.0 86 40.7
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.1e-07 60.8 179 30.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.6e-07 60.1 270 29.6
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 3.1e-06 57.0 144 34.7


User provided reference genes

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