Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1692.6 845 100.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1686.4 845 99.5
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1682.5 845 99.3
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1662.1 845 98.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1627.1 845 96.2
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1585.9 845 93.5
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1583.5 845 93.3
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1566.2 845 92.1
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1559.3 846 92.0
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1555.0 846 91.4
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1545.0 845 90.9
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1528.5 763 99.3
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1453.3 831 87.1
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1447.2 845 84.3
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1360.1 845 79.2
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 844 79.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 845 78.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 847 78.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1344.3 845 78.9
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 845 78.3
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 847 78.3
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 845 77.9
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 845 77.8
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 849 78.8
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 845 78.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 847 77.9
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 845 76.8
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1328.5 875 76.2
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 845 77.4
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 847 77.7
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1323.1 846 77.8
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1318.1 845 77.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 845 77.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 847 76.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1313.9 845 76.9
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 845 76.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 877 74.8
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 846 77.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1308.5 865 76.1
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 845 76.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 76.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 845 76.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1305.4 847 76.5
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 845 76.4
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1303.5 845 77.2
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 845 76.4
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1299.3 845 75.4
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 845 76.8
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 846 76.5
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 846 76.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 845 76.2
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1295.4 847 76.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 833 76.8
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 847 76.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 845 76.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 852 76.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 847 74.9
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1287.7 837 77.1
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1286.9 846 76.2
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1286.9 846 76.8
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1281.9 850 74.6
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 851 75.9
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 846 76.1
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1279.6 845 76.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 845 75.1
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 847 75.8
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 845 74.4
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 850 74.1
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1273.8 845 75.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 918 70.9
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 922 71.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1270.0 911 71.0
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 858 74.7
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1264.6 976 67.9
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 920 70.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1262.7 847 74.5
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1260.7 845 73.5
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1259.2 845 73.5
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 845 74.4
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1253.0 865 72.5
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1233.4 826 75.5
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1222.6 763 78.5
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1220.3 876 71.8
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1213.4 790 74.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 849 72.8
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1211.1 835 72.8
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1195.6 845 71.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 752 78.2
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1187.9 774 76.2
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1185.6 849 72.0
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1176.8 763 75.5
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1170.6 846 71.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1166.0 793 73.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1158.3 848 68.3
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1154.0 865 66.9
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1134.0 812 68.3
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1123.6 851 66.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1120.9 761 73.1
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 697 77.6
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1080.9 700 76.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1077.8 864 64.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1076.2 845 66.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 5.8e-312 1073.9 846 65.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 5.8e-312 1073.5 858 63.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.9e-307 1057.4 846 63.2
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.3e-282 975.7 661 73.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.6e-262 909.1 852 58.8
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.7e-250 869.8 643 70.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.8e-234 816.6 543 72.9
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.4e-212 743.8 514 71.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.6e-198 697.2 424 81.1
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 6.6e-165 585.5 335 86.6
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.2e-119 433.3 260 83.8
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-115 421.8 285 73.3
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-115 420.6 308 72.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.2e-107 394.4 308 63.6
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.1e-92 345.5 194 86.1
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.0e-92 344.7 263 68.1
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 9.7e-84 315.8 394 48.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 5.0e-64 250.4 275 52.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.9e-63 248.4 182 69.8
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.1e-53 214.5 139 77.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-46 192.6 146 65.8
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.4e-42 178.3 117 77.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 7.8e-33 146.7 94 73.4
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 3.3e-31 141.4 83 78.3
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 3.6e-30 137.9 178 42.7
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.2e-28 132.9 82 82.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.3e-27 129.4 102 59.8
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.8e-27 127.9 76 78.9
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.5e-23 115.2 83 73.5
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.4e-20 104.8 81 61.7
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 9.9e-20 103.2 75 68.0
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 3.6e-14 84.7 105 51.4
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 8.1e-14 83.6 63 63.5
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.2e-10 71.6 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.0e-08 66.6 50 64.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 7.4e-07 60.5 41 75.6


User provided reference genes

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