Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 4.2e-49 197.6 92 100.0
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 4.2e-49 197.6 92 100.0
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 4.2e-49 197.6 92 100.0
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 4.2e-49 197.6 92 100.0
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 6.1e-48 193.7 91 97.8
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 6.1e-48 193.7 91 97.8
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 6.1e-48 193.7 91 97.8
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 6.1e-48 193.7 91 97.8
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 6.1e-48 193.7 91 97.8
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 5.1e-47 190.7 92 96.7
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 5.1e-47 190.7 91 96.7
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 7.4e-46 186.8 91 95.6
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 1.4e-44 182.6 93 93.5
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 3.1e-44 181.4 94 91.5
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 3.1e-44 181.4 94 91.5
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 4.1e-44 181.0 95 90.5
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 3.4e-43 177.9 94 89.4
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 5.0e-42 174.1 91 86.8
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.0e-38 162.2 91 80.2
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 2.0e-38 162.2 91 80.2
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 3.3e-38 161.4 94 79.8
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 3.3e-38 161.4 90 81.1
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 2.8e-37 158.3 91 80.2
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.4e-36 156.0 92 72.8
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 1.8e-36 155.6 92 73.9
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.1e-36 154.8 85 80.0
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.1e-36 154.8 85 80.0
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.1e-36 154.8 85 80.0
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 4.1e-36 154.5 85 80.0
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 5.3e-36 154.1 91 78.0
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 7.0e-36 153.7 84 78.6
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 9.1e-36 153.3 85 77.6
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 9.1e-36 153.3 85 80.0
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 1.2e-35 152.9 85 77.6
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 1.2e-35 152.9 85 78.8
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.2e-35 152.9 92 75.0
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 1.6e-35 152.5 92 72.8
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 1.6e-35 152.5 85 76.5
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.6e-35 152.5 84 78.6
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 2.6e-35 151.8 84 79.8
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.6e-35 151.8 92 73.9
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 2.6e-35 151.8 85 78.8
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 3.5e-35 151.4 85 77.6
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 3.5e-35 151.4 92 72.8
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 3.5e-35 151.4 92 73.9
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 3.5e-35 151.4 91 73.6
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 3.5e-35 151.4 85 77.6
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 3.5e-35 151.4 85 77.6
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 3.5e-35 151.4 89 73.0
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 5.9e-35 150.6 90 77.8
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 5.9e-35 150.6 91 74.7
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 7.7e-35 150.2 85 77.6
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 7.7e-35 150.2 85 76.5
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 7.7e-35 150.2 84 78.6
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 7.7e-35 150.2 83 78.3
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 7.7e-35 150.2 83 78.3
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 7.7e-35 150.2 83 78.3
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 7.7e-35 150.2 83 78.3
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 7.7e-35 150.2 87 73.6
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 7.7e-35 150.2 90 74.4
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 7.7e-35 150.2 85 78.8
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.0e-34 149.8 84 77.4
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 1.0e-34 149.8 84 77.4
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.0e-34 149.8 91 71.4
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 1.0e-34 149.8 85 75.3
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.7e-34 149.1 84 76.2
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.7e-34 149.1 84 77.4
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 2.2e-34 148.7 88 75.0
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 2.2e-34 148.7 85 77.6
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.9e-34 148.3 85 76.5
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.9e-34 148.3 88 72.7
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 3.8e-34 147.9 92 70.7
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 3.8e-34 147.9 91 72.5
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 3.8e-34 147.9 85 75.3
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 5.0e-34 147.5 87 73.6
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 6.5e-34 147.1 86 73.3
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 8.5e-34 146.7 85 74.1
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 8.5e-34 146.7 84 76.2
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 1.1e-33 146.4 80 80.0
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.5e-33 146.0 84 72.6
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 1.5e-33 146.0 86 76.7
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 1.5e-33 146.0 86 76.7
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.5e-33 145.2 86 74.4
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 3.2e-33 144.8 84 75.0
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.2e-33 144.4 85 72.9
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 4.2e-33 144.4 92 75.0
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 5.5e-33 144.1 83 72.3
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 5.5e-33 144.1 84 76.2
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 7.2e-33 143.7 84 73.8
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 7.2e-33 143.7 84 73.8
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 7.2e-33 143.7 84 73.8
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 2.1e-32 142.1 84 72.6
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 2.1e-32 142.1 79 77.2
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 2.7e-32 141.7 89 74.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 2.7e-32 141.7 81 74.1
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 3.6e-32 141.4 86 74.4
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 4.7e-32 141.0 89 69.7
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 8.0e-32 140.2 91 70.3
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 8.0e-32 140.2 85 70.6
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 8.0e-32 140.2 85 70.6
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.0e-31 139.8 91 69.2
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.0e-31 139.8 81 77.8
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.8e-31 139.0 94 66.0
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 2.3e-31 138.7 89 68.5
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 3.0e-31 138.3 91 68.1
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 8.8e-31 136.7 84 72.6
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 2.6e-30 135.2 84 69.0
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 7.5e-30 133.7 84 70.2
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 9.7e-30 133.3 81 70.4
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 4.8e-29 131.0 83 72.3
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.1e-28 129.8 69 79.7
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 4.1e-28 127.9 90 64.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.7e-26 122.5 89 62.9
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 4.2e-25 117.9 84 61.9
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 2.7e-24 115.2 71 67.6
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.2e-23 110.9 70 70.0
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.2e-23 110.9 70 70.0
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.7e-19 98.6 59 71.2
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 7.7e-19 97.1 80 50.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 1.5e-17 92.8 82 46.3
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 1.6e-16 89.4 88 61.4
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 4.7e-16 87.8 89 44.9
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 1.7e-13 79.3 78 43.6
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 1.6e-11 72.8 85 38.8
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 1.0e-10 70.1 42 64.3
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 2.1e-08 62.4 41 75.6
Zm00001eb053260 Zea mays HOM05D005988 ORTHO05D007392 3.0e-07 58.5 36 72.2
Aa31LG3G5740 Aethionema arabicum HOM05D000002 ORTHO05D002065 5.2e-07 57.8 44 70.5
Zm00001eb053240 Zea mays HOM05D005988 ORTHO05D007392 5.2e-07 57.8 36 69.4
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 3.4e-06 55.1 56 44.6


User provided reference genes

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