Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-22 109.8 87 100.0
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-22 109.8 87 100.0
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 3.9e-20 101.3 87 95.4
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 2.5e-19 98.6 87 93.1
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 5.6e-19 97.4 87 83.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 2.8e-18 95.1 87 82.8
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 5.2e-17 90.9 87 78.2
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.5e-16 89.4 89 80.9
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-15 85.5 87 73.6
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-15 85.5 87 74.7
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.2e-15 85.5 87 72.4
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 2.2e-15 85.5 87 73.6
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.2e-14 81.3 85 85.9
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 9.2e-14 80.1 87 57.5
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.6e-10 68.2 80 78.8
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 4.8e-10 67.8 81 50.6
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 5.3e-09 64.3 41 70.7
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.3e-09 64.3 41 73.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.3e-09 64.3 41 73.2
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 9.0e-09 63.5 41 70.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-08 63.2 42 71.4
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.2e-08 63.2 41 73.2
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-08 63.2 42 69.0
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-08 63.2 42 71.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-08 63.2 42 71.4
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-08 62.8 41 70.7
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-08 62.8 86 43.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.5e-08 62.8 41 73.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 2.0e-08 62.4 42 71.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-08 62.4 41 73.2
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-08 62.4 87 42.5
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.6e-08 62.0 41 68.3
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.6e-08 62.0 41 68.3
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 3.4e-08 61.6 42 66.7
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.4e-08 61.6 41 70.7
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 3.4e-08 61.6 41 70.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 4.4e-08 61.2 41 70.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 4.4e-08 61.2 83 44.6
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 7.6e-08 60.5 42 71.4
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 9.9e-08 60.1 41 63.4
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 9.9e-08 60.1 41 65.9
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.3e-07 59.7 41 65.9
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.3e-07 59.7 41 63.4
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.3e-07 59.7 42 66.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.3e-07 59.7 42 66.7
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 1.7e-07 59.3 87 41.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.7e-07 59.3 41 63.4
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.2e-07 58.9 42 69.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.2e-07 58.9 42 69.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.2e-07 58.9 41 65.9
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.9e-07 58.5 41 65.9
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.9e-07 58.5 86 41.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.8e-07 58.2 41 65.9
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 3.8e-07 58.2 43 62.8
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.8e-07 58.2 40 67.5
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.8e-07 58.2 40 65.0
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 4.9e-07 57.8 43 62.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 4.9e-07 57.8 41 61.0
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 4.9e-07 57.8 41 65.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 6.4e-07 57.4 42 69.0
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.4e-07 57.4 41 65.9
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.4e-07 57.4 41 65.9
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.4e-07 57.4 41 65.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 8.4e-07 57.0 83 41.0
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 8.4e-07 57.0 43 65.1
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.4e-07 57.0 40 60.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.4e-06 56.2 38 68.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.4e-06 56.2 41 63.4
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.9e-06 55.8 38 63.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 3.2e-06 55.1 83 39.8
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.2e-06 54.7 41 58.5
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 5.4e-06 54.3 37 64.9
MELO3C023781.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.3e-06 53.5 35 71.4
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 9.3e-06 53.5 86 41.9


User provided reference genes

Program Settings