Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-201 706.4 356 100.0
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.0e-188 661.4 356 94.4
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.0e-180 636.7 356 92.7
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 5.2e-172 607.8 356 89.6
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.7e-160 568.9 358 84.6
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 3.4e-155 552.0 356 80.6
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 6.6e-151 537.7 356 77.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 9.6e-150 533.9 356 76.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.1e-148 530.4 356 78.1
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.7e-146 523.1 356 75.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 4.9e-146 521.5 357 76.8
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 4.9e-146 521.5 357 76.8
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 6.0e-144 514.6 357 75.1
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.3e-141 506.9 403 68.7
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.7e-138 496.5 358 72.1
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.2e-137 492.3 374 69.3
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 3.4e-115 419.1 358 61.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 9.4e-113 411.0 360 60.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.2e-112 410.6 359 59.3
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.8e-111 406.8 359 59.3
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.1e-110 404.1 359 58.8
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 4.3e-110 402.1 364 58.5
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-109 400.6 359 58.2
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-109 400.2 359 59.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.2e-109 399.8 359 59.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.2e-109 399.8 359 59.6
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.4e-108 397.1 359 59.1
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.4e-108 397.1 360 58.6
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.8e-108 396.7 389 52.2
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.1e-108 396.0 359 58.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.5e-107 393.7 359 56.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.5e-107 393.7 360 56.7
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.7e-107 391.3 359 56.5
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.0e-106 391.0 359 56.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.0e-106 391.0 360 56.9
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.7e-106 390.2 359 54.6
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.9e-106 389.4 360 57.5
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.8e-106 389.0 359 58.2
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-105 387.1 359 56.8
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.2e-105 386.0 359 57.1
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 4.2e-105 385.6 359 57.1
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 5.5e-105 385.2 359 55.2
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 5.5e-105 385.2 359 57.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.2e-105 384.8 359 57.7
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.4e-105 384.4 366 57.1
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.4e-105 384.4 359 57.4
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.2e-104 384.0 361 56.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.6e-104 383.6 361 57.3
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.1e-104 383.3 363 56.5
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.1e-104 383.3 359 57.1
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 4.7e-104 382.1 362 57.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 7.9e-104 381.3 360 55.8
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.0e-103 380.9 342 57.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.0e-103 380.9 361 57.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.4e-103 380.6 359 57.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 3.0e-103 379.4 360 55.6
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.7e-102 375.2 374 55.9
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 2.8e-101 372.9 362 56.4
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 6.3e-101 371.7 359 53.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.8e-100 370.2 359 56.3
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 2.4e-100 369.8 359 55.4
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.1e-100 369.4 374 52.9
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.2e-99 367.5 359 54.0
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.0e-99 366.7 359 54.0
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 3.5e-99 365.9 359 54.3
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 7.7e-99 364.8 358 52.0
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 7.7e-99 364.8 360 55.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 8.5e-98 361.3 359 54.3
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 7.2e-97 358.2 359 52.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 9.4e-97 357.8 360 52.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.6e-96 357.1 360 55.0
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.6e-96 357.1 428 48.4
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.1e-96 356.7 359 56.0
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.1e-96 356.7 359 51.5
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 4.7e-96 355.5 415 48.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 6.1e-96 355.1 359 53.8
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 6.1e-96 355.1 359 52.6
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.4e-95 354.0 362 53.3
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.8e-95 353.6 361 55.1
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.8e-95 353.6 359 53.5
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.6e-94 349.7 233 78.5
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.6e-94 349.7 361 54.6
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 5.7e-94 348.6 400 49.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 3.7e-93 345.9 361 51.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.1e-92 344.4 336 54.8
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.1e-92 342.8 359 49.9
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 3.1e-92 342.8 342 52.9
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 7.0e-92 341.7 359 51.5
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 2.7e-91 339.7 359 50.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.5e-91 339.3 359 49.3
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.9e-91 338.6 350 52.9
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.2e-89 331.6 316 57.6
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 3.4e-86 322.8 344 51.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.3e-85 320.9 362 49.4
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 5.4e-84 315.5 363 47.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 5.4e-84 315.5 398 45.7
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 7.0e-84 315.1 357 49.9
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 4.5e-83 312.4 356 50.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-82 311.2 364 48.9
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.2e-82 310.1 362 48.3
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.5e-82 308.5 359 47.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-81 307.4 359 47.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 6.1e-80 302.0 362 46.1
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-79 301.2 340 50.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.3e-79 300.1 365 46.0
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.8e-79 298.1 311 54.3
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.0e-78 297.0 360 45.6
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 5.7e-78 295.4 362 45.3
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.3e-77 294.3 227 63.9
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 8.3e-77 291.6 360 44.2
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.1e-76 289.7 272 55.5
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 3.1e-76 289.7 360 45.8
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.5e-73 280.0 388 42.5
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.3e-73 279.3 382 41.9
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.2e-70 271.2 303 47.9
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.9e-69 266.5 270 52.6
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-65 253.4 171 77.2
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.3e-65 251.9 352 45.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.8e-64 250.0 362 43.6
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.7e-61 239.6 235 57.4
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.3e-61 238.4 315 45.7
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.1e-60 238.0 341 41.3
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 3.3e-57 226.5 287 44.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.6e-56 224.2 356 39.3
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.0e-54 217.2 192 58.9
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.1e-52 211.5 323 40.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.2e-52 209.9 359 37.6
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 4.6e-51 206.1 272 41.5
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 9.9e-46 188.3 171 59.1
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.9e-44 184.1 131 72.5
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.1e-44 183.0 208 49.5
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-43 180.6 282 39.7
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.9e-41 174.1 161 52.2
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.1e-40 170.6 190 50.5
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 5.2e-39 166.0 137 57.7
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.7e-37 161.0 171 50.9
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.4e-36 157.1 186 48.4
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 9.3e-36 155.2 322 33.2
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.0e-34 151.8 163 49.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.0e-34 150.2 326 33.1
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.9e-29 133.7 260 31.2
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.1e-27 127.5 130 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 7.9e-27 125.6 234 31.6
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 3.3e-25 120.2 129 48.1
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.8e-24 117.1 326 27.9
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 4.0e-23 113.2 104 51.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.8e-22 109.4 84 66.7
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.3e-21 108.2 84 66.7
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.3e-21 108.2 84 66.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-20 104.8 172 40.1
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.9e-17 94.4 84 60.7
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.3e-17 93.6 109 48.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 7.4e-17 92.4 106 52.8
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.4e-14 83.6 61 67.2
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.0e-13 82.0 87 51.7
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.2e-12 77.0 92 47.8
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 4.3e-09 66.6 61 57.4
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 7.4e-09 65.9 58 56.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.5e-06 58.2 54 59.3


User provided reference genes

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