Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 7.4e-259 896.7 471 100.0
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-256 889.0 471 99.6
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.6e-256 889.0 471 99.6
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 4.0e-252 874.4 494 94.7
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.7e-250 867.8 471 97.5
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.7e-245 851.7 471 95.5
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 3.0e-244 848.2 471 94.9
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.4e-243 844.3 471 95.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 9.8e-243 843.2 471 94.7
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-241 839.7 471 94.9
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 4.1e-233 811.2 471 91.1
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 5.4e-233 810.8 471 91.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.5e-232 808.1 471 90.0
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.0e-231 806.6 471 90.7
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.3e-231 806.2 471 90.2
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.3e-231 805.4 471 90.0
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 2.9e-231 805.1 471 90.4
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 8.6e-231 803.5 471 90.2
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-230 802.7 471 90.2
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.5e-230 802.7 471 90.2
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 7.3e-230 800.4 471 90.0
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 9.8e-227 790.0 498 85.1
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 3.0e-223 778.5 471 86.8
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.1e-220 770.0 470 85.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.8e-220 769.2 471 85.1
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.2e-219 766.5 471 85.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.0e-219 765.8 471 84.3
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.6e-219 765.4 471 85.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.6e-219 765.4 471 85.1
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 4.4e-219 764.6 471 85.1
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 5.8e-219 764.2 471 84.9
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 9.8e-219 763.5 471 84.5
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.9e-218 761.9 472 84.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 6.4e-218 760.8 471 85.4
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 6.4e-218 760.8 471 84.7
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 8.3e-218 760.4 471 84.7
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.4e-217 759.6 471 84.5
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 4.1e-217 758.1 471 84.9
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 4.1e-217 758.1 471 83.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 5.4e-217 757.7 471 84.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.6e-216 756.1 471 84.5
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.7e-216 755.4 471 83.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.7e-216 755.4 471 83.7
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 6.0e-216 754.2 471 83.9
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.7e-215 752.7 471 83.7
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.0e-215 751.9 471 84.3
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.9e-215 751.5 471 81.7
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 5.0e-215 751.1 471 83.2
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 8.6e-215 750.4 471 83.2
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 8.6e-215 750.4 471 82.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.5e-214 749.6 471 83.0
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.9e-214 749.2 472 82.8
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 5.6e-214 747.7 471 82.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 2.1e-213 745.7 471 83.0
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.1e-213 745.7 471 82.6
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.1e-213 745.7 473 82.9
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.8e-213 745.3 470 81.9
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.8e-213 745.3 471 82.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 6.2e-213 744.2 471 82.2
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.1e-212 743.4 471 82.6
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.4e-212 743.0 471 81.7
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.4e-212 743.0 471 82.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 2.3e-212 742.3 508 78.1
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.1e-212 741.9 471 81.5
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 5.2e-212 741.1 470 82.1
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.8e-212 740.7 472 81.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.5e-211 739.6 472 81.6
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.3e-210 736.5 470 82.8
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.2e-210 735.7 472 81.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.2e-210 735.7 508 78.0
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 3.7e-210 734.9 467 82.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.9e-209 732.6 470 81.7
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 3.2e-209 731.9 472 81.6
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 5.4e-209 731.1 472 80.7
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.0e-207 726.9 471 80.9
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.7e-207 726.1 471 82.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.1e-207 724.5 495 78.0
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 6.6e-207 724.2 471 80.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.9e-206 722.6 471 81.3
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 7.6e-203 710.7 546 71.8
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.2e-202 709.1 451 82.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.1e-197 692.6 471 78.3
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 4.7e-197 691.4 472 77.8
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 9.0e-196 687.2 443 81.7
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.4e-194 680.6 493 74.6
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.6e-192 674.9 472 76.7
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.3e-191 672.5 494 72.9
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.4e-187 658.7 420 82.6
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-186 656.0 420 81.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.2e-186 656.0 420 81.2
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.6e-184 649.8 399 86.0
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.7e-183 644.0 427 80.3
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.1e-181 639.4 463 74.1
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.7e-181 638.6 471 70.1
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 4.8e-181 638.3 470 75.1
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.8e-173 611.7 471 71.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 9.0e-172 607.4 425 76.2
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.6e-171 605.9 385 83.4
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 2.2e-165 586.3 467 66.8
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-164 583.9 314 97.8
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 3.7e-157 558.9 376 77.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 8.2e-157 557.8 471 65.4
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 5.3e-156 555.1 342 86.8
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.3e-154 550.4 352 80.4
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.1e-153 547.4 375 76.0
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.6e-152 543.5 472 60.2
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 2.3e-151 539.7 367 78.7
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 8.0e-144 514.6 325 84.0
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.0e-127 459.5 283 85.9
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 5.0e-122 442.2 325 74.8
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.6e-118 429.9 367 65.1
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.0e-106 389.8 247 83.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 4.9e-85 319.3 313 59.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 2.4e-79 300.4 160 100.0
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 5.3e-79 299.3 301 54.8
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.0e-78 297.4 183 79.8
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.7e-77 294.3 174 85.1
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.2e-77 293.9 505 36.8
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 2.9e-77 293.5 239 67.8
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 4.5e-70 269.6 211 59.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.2e-68 263.1 409 45.7
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.1e-68 262.3 295 52.2
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.1e-68 262.3 140 100.0
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 4.2e-52 209.9 331 37.8
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.5e-52 209.5 119 93.3
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 2.1e-51 207.6 196 63.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.8e-47 194.5 487 31.6
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.1e-43 179.5 107 80.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.1e-43 179.5 111 86.5
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.4e-41 172.6 105 81.0
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 1.4e-39 168.3 110 80.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.2e-36 157.1 91 89.0
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 3.7e-32 143.7 80 93.8
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-28 132.1 77 85.7
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-27 128.3 72 90.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.6e-27 127.1 72 87.5
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.3e-26 124.4 74 81.1
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-25 121.3 72 81.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.3e-25 120.6 74 79.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.7e-24 117.1 79 74.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 3.8e-21 107.1 99 56.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.5e-20 103.2 57 82.5
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.0e-18 99.0 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 2.2e-16 91.3 52 92.3
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-12 77.8 46 91.3
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.2e-12 77.4 47 83.0
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.2e-12 76.3 52 80.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-10 72.0 55 76.4
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 4.4e-09 67.0 74 48.6


User provided reference genes

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