Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.0e-150 536.6 248 100.0
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 3.0e-150 535.0 248 99.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-142 509.2 249 94.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 8.7e-142 506.9 249 94.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 8.7e-142 506.9 249 94.4
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 7.6e-138 493.8 253 89.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.2e-135 486.5 251 88.4
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 6.1e-135 484.2 255 85.9
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 6.7e-134 480.7 256 84.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 9.7e-133 476.9 249 86.3
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.1e-131 473.4 256 83.6
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.1e-131 473.4 256 84.0
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 5.3e-131 471.1 252 83.7
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.7e-129 466.1 246 86.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 5.0e-129 464.5 246 86.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 8.5e-129 463.8 246 86.2
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 3.2e-128 461.8 250 84.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 7.2e-128 460.7 246 85.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 7.2e-128 460.7 246 85.8
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 9.4e-128 460.3 256 80.1
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.4e-126 456.4 246 81.3
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 6.7e-126 454.1 248 81.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 4.1e-123 444.9 241 82.6
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 5.3e-123 444.5 243 81.5
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 5.3e-123 444.5 243 82.3
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.2e-122 443.4 241 81.3
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-122 443.4 240 82.5
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.2e-122 443.4 243 79.4
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.5e-122 443.0 241 81.7
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 3.4e-122 441.8 241 82.2
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 4.5e-122 441.4 257 76.7
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.0e-121 440.3 244 79.1
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.0e-121 440.3 255 77.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.0e-121 440.3 241 81.3
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.0e-121 440.3 255 76.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.3e-121 439.9 255 76.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.3e-121 439.9 255 76.1
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.7e-121 439.5 253 77.5
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.2e-121 439.1 241 80.9
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.2e-121 439.1 244 77.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.9e-121 438.7 242 80.2
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 6.5e-121 437.6 241 80.5
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 6.5e-121 437.6 242 78.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.1e-120 436.8 255 75.7
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.1e-120 436.8 241 80.5
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.4e-120 436.4 252 78.2
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.9e-120 436.0 245 78.4
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.9e-120 436.0 235 82.6
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 3.2e-120 435.3 242 79.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.2e-120 434.9 241 80.9
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 5.5e-120 434.5 240 79.2
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 7.2e-120 434.1 244 78.7
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 9.4e-120 433.7 244 78.7
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.2e-119 433.3 234 80.8
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.6e-119 433.0 239 79.5
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 3.6e-119 431.8 244 79.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 6.1e-119 431.0 253 75.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.4e-118 429.9 242 78.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 2.3e-118 429.1 241 79.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 2.3e-118 429.1 232 82.3
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.0e-118 428.7 245 76.7
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 3.0e-118 428.7 240 77.9
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 3.9e-118 428.3 241 78.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.9e-118 428.3 257 73.5
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.9e-118 428.3 241 78.4
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.0e-117 426.0 250 76.4
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.0e-117 426.0 242 78.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.3e-117 425.2 242 77.3
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 3.3e-117 425.2 238 79.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 3.3e-117 425.2 236 78.8
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.4e-117 424.1 239 78.2
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.4e-117 424.1 244 76.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 9.7e-117 423.7 250 76.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.3e-116 423.3 248 74.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.3e-116 423.3 241 75.5
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.3e-116 423.3 250 76.0
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.3e-116 423.3 243 77.0
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.7e-116 422.9 248 76.6
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.7e-116 422.9 242 76.0
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 2.8e-116 422.2 228 80.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 4.8e-116 421.4 247 74.5
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.3e-116 421.0 247 74.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 8.2e-116 420.6 239 77.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-115 420.2 242 76.9
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.4e-115 419.9 239 77.8
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.8e-115 419.5 253 73.1
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 2.4e-115 419.1 250 75.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.1e-115 418.3 249 73.9
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 5.3e-115 417.9 242 76.9
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 7.0e-115 417.5 247 74.9
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 7.0e-115 417.5 232 78.9
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 9.1e-115 417.2 231 77.9
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.6e-114 416.4 232 78.4
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.6e-114 415.6 228 79.8
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.6e-114 415.6 246 74.0
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.5e-114 415.2 246 73.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.5e-114 415.2 246 73.6
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 5.9e-114 414.5 243 75.3
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.9e-114 414.5 239 75.7
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 5.9e-114 414.5 237 75.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 5.9e-114 414.5 236 75.0
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.3e-113 413.3 240 74.2
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.3e-113 413.3 241 73.4
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.7e-113 412.9 238 76.5
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.2e-113 412.5 239 77.0
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.2e-113 412.5 240 74.2
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.8e-113 411.8 231 77.9
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 3.8e-113 411.8 240 75.0
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.8e-113 411.8 240 77.1
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 5.0e-113 411.4 232 77.2
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 6.5e-113 411.0 236 73.7
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 8.5e-113 410.6 241 74.7
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.1e-112 410.2 242 75.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 231 78.4
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.5e-112 409.8 244 74.2
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.5e-112 409.8 241 76.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 235 75.3
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.5e-112 409.1 248 70.6
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.5e-112 409.1 238 75.2
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.5e-112 409.1 246 73.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 9.4e-112 407.1 239 74.9
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.1e-111 406.0 238 73.9
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.7e-111 404.8 252 69.4
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 4.7e-111 404.8 241 74.7
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.1e-111 404.4 228 77.2
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 6.1e-111 404.4 240 75.8
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 4.0e-110 401.7 243 69.5
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.2e-110 401.4 240 73.8
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 6.7e-110 401.0 239 72.4
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.7e-110 401.0 233 72.5
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.4e-109 398.3 247 70.4
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.4e-109 398.3 247 70.4
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.5e-109 397.5 233 73.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.2e-108 396.0 240 73.3
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.1e-107 393.7 245 69.8
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.1e-107 392.1 226 74.8
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 9.1e-107 390.6 222 78.4
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 7.2e-104 380.9 232 71.6
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.6e-103 379.8 242 69.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 8.0e-103 377.5 235 71.9
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.5e-101 373.2 209 81.3
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 9.8e-101 370.5 245 69.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.3e-100 370.2 230 70.4
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 4.5e-98 361.7 238 66.4
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 6.6e-97 357.8 237 67.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.8e-95 352.4 250 62.8
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 9.8e-93 344.0 223 67.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.7e-92 342.0 226 66.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.8e-91 339.7 242 62.8
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.5e-90 335.1 244 63.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 7.8e-90 334.3 231 63.6
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 8.0e-79 297.7 166 80.1
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.0e-78 295.4 244 57.8
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.9e-76 289.3 156 80.1
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 4.9e-76 288.5 156 78.8
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 9.9e-61 237.7 159 65.4
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.2e-55 220.7 218 50.9
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-53 213.8 231 48.1
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 6.9e-46 188.3 212 47.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 8.1e-39 164.9 96 76.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 6.2e-31 138.7 121 59.5
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 4.9e-28 129.0 116 53.4
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.5e-24 117.5 144 45.1
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 2.9e-12 76.6 51 54.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.9e-12 76.6 64 56.2


User provided reference genes

Program Settings