Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2100.1 1064 100.0
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 2100.1 1064 100.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2072.0 1064 98.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 2070.0 1064 98.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 2068.9 1064 98.5
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 2033.8 1066 96.8
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 2010.7 1070 95.6
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1973.4 1070 93.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1972.6 1070 93.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1948.3 1067 91.8
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1944.5 1070 91.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1942.2 1071 91.1
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1843.9 1104 84.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1795.4 1085 82.5
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1770.7 1064 83.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1076 76.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1089 74.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1618.2 1089 73.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1087 74.3
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1083 73.0
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1597.8 1088 73.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1597.8 1087 72.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1077 73.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1074 74.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1079 73.6
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1086 72.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1594.7 1079 73.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1592.4 1090 72.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1592.4 1093 72.8
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1074 74.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1082 73.8
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1085 72.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1586.6 1080 73.1
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1585.5 1069 72.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1084 72.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1080 73.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1077 73.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1577.4 1076 72.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1573.1 1083 72.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1081 72.7
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1084 71.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1083 71.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1083 71.2
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1564.7 1085 72.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1075 72.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1081 71.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1087 71.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1076 72.0
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1076 72.4
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1091 70.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 1079 71.4
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1076 72.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1553.9 1085 70.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1108 70.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1550.4 1079 70.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1550.4 1079 70.4
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1079 70.3
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1088 70.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1087 70.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1540.8 1084 70.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1099 69.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1087 70.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1538.9 1084 70.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1538.5 1091 70.7
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1537.7 1087 70.1
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1170 67.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1534.2 1084 69.9
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1076 69.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1091 70.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1531.9 1082 70.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1074 71.3
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1528.5 1070 69.9
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1527.3 1170 67.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1088 68.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1513.4 1088 69.9
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1511.5 1075 70.1
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1078 70.3
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1509.6 1105 68.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1508.8 1075 70.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 1081 69.1
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1506.1 1075 70.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1081 68.9
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1500.3 1085 69.2
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1497.3 1074 70.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1491.9 1090 67.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1486.9 1074 69.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1077 69.2
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1087 68.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1480.7 1140 65.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1082 68.8
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1478.0 1076 68.7
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1477.6 1084 68.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 1077 67.7
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1474.5 993 73.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1473.4 1075 67.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 1010 72.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1464.1 1077 68.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1463.4 1076 68.5
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1461.8 1098 66.7
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1452.2 1075 66.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1446.0 1049 68.1
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1422.9 1093 64.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1422.1 1082 65.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1421.4 996 71.9
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1415.2 1077 65.2
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1410.6 1101 66.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1404.0 981 71.8
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1381.3 1097 62.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1371.3 1075 65.3
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1365.5 1080 65.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1281.9 1073 63.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1255.4 787 77.6
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1069 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1140.2 1079 52.4
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1132.9 1111 51.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1127.1 717 77.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 671 82.0
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1122.8 689 80.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1117.8 1078 52.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1105.9 1077 51.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 2.6e-283 979.2 752 66.9
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.6e-279 964.5 831 57.6
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.5e-270 936.0 609 75.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-264 916.8 812 58.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.9e-246 856.7 938 48.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.0e-239 834.3 629 68.4
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.8e-235 818.5 499 79.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.9e-208 728.4 635 60.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.2e-192 677.9 973 43.7
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.7e-160 569.7 602 52.2
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.1e-160 569.3 429 67.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.5e-145 520.8 303 80.9
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.3e-128 465.3 312 71.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.7e-107 394.4 383 54.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.2e-64 251.9 205 60.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.4e-63 248.4 286 47.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.7e-61 242.3 136 78.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.0e-57 228.8 241 51.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.0e-46 192.2 138 61.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.1e-35 155.6 238 41.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.1e-28 133.3 72 84.7
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.1e-28 133.3 133 53.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.5e-28 132.9 156 45.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.7e-24 119.4 108 55.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.4e-24 117.1 97 60.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.9e-20 105.9 88 59.1
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.3e-12 78.6 49 65.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.6e-12 77.0 45 80.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.8e-11 75.5 76 46.1
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.9e-08 65.5 33 90.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.1e-07 63.5 120 39.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.4e-07 63.2 39 71.8
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 1.2e-06 60.1 66 50.0
Mapoly0034s0060 Marchantia polymorpha HOM05D000418 ORTHO05D000317 2.1e-06 59.3 327 23.9


User provided reference genes

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