Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1902.5 959 100.0
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1901.3 959 99.9
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1788.5 960 94.5
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1786.5 960 94.6
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1718.0 960 91.8
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1605.1 971 85.3
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1575.5 964 84.0
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1575.5 964 84.0
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1560.8 971 84.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1560.4 964 83.1
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1557.0 973 82.5
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1528.8 977 81.8
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1519.6 977 81.7
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1507.7 964 81.4
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1505.0 977 79.8
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1501.1 964 80.7
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.2e-303 1046.6 856 63.6
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 1.3e-302 1043.1 663 82.8
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 3.1e-272 942.2 964 53.6
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 8.0e-268 927.5 934 55.4
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 5.7e-266 921.4 1019 52.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 7.5e-266 921.0 943 54.3
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 2.2e-265 919.5 1026 51.3
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.8e-264 916.4 1039 51.1
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 4.1e-264 915.2 928 53.8
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.7e-262 909.8 1038 50.7
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.7e-262 909.8 1026 51.0
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.9e-261 906.4 962 52.7
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 8.0e-260 901.0 1004 51.3
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 2.3e-259 899.4 979 52.3
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 3.1e-259 899.0 944 53.1
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 1.2e-258 897.1 1015 50.7
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 5.8e-258 894.8 998 51.9
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.3e-257 893.6 987 51.8
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.2e-257 892.9 1013 50.2
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 2.9e-257 892.5 1024 49.8
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 4.9e-257 891.7 943 53.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 1.9e-256 889.8 1013 49.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-256 889.8 1009 50.0
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.4e-256 889.4 1020 50.4
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.1e-256 888.6 1013 50.1
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 9.2e-256 887.5 990 53.1
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 9.2e-256 887.5 1003 50.1
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 1.2e-255 887.1 970 52.5
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.5e-255 885.6 985 49.9
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 6.0e-255 884.8 988 50.9
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 6.0e-255 884.8 1007 51.1
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 5.0e-254 881.7 969 52.4
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 6.6e-254 881.3 983 51.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 1.1e-253 880.6 983 51.6
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 4.3e-253 878.6 972 52.2
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 7.3e-253 877.9 947 52.0
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 3.6e-252 875.5 983 51.4
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.4e-251 873.6 1003 50.6
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.0e-250 869.8 991 51.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.0e-250 869.8 950 51.6
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 2.6e-250 869.4 1018 49.7
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 7.8e-247 857.8 938 51.8
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 2.3e-246 856.3 1008 48.6
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.9e-246 855.5 857 54.4
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.1e-246 855.1 938 51.7
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 8.6e-246 854.4 1032 49.2
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 7.3e-245 851.3 956 49.4
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 7.3e-245 851.3 983 49.2
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 6.8e-243 844.7 969 49.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 2.9e-241 839.3 960 50.4
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.4e-240 837.0 1015 48.6
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 5.4e-240 835.1 870 51.4
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.1e-240 834.7 1011 47.8
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 2.7e-239 832.8 1041 47.8
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 7.8e-239 831.2 1027 46.7
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.0e-238 830.9 876 52.3
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 5.1e-238 828.6 961 49.4
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.5e-237 826.2 966 47.8
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.5e-237 826.2 946 50.2
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 8.1e-236 821.2 1029 46.7
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 3.1e-235 819.3 1029 47.8
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.8e-235 818.1 970 47.5
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 9.3e-232 807.7 952 49.8
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.9e-230 802.4 990 47.8
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 5.1e-230 802.0 991 47.8
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.2e-226 790.8 969 49.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 1.5e-226 790.4 986 46.0
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 2.6e-226 789.6 945 50.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 2.1e-223 780.0 861 50.8
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 4.3e-221 772.3 848 49.9
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.8e-219 766.9 836 51.1
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 6.9e-219 765.0 848 51.2
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 9.0e-219 764.6 971 45.7
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 2.9e-217 759.6 960 44.8
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 6.4e-217 758.4 842 50.2
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.9e-216 756.9 1010 45.6
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.2e-210 737.6 882 48.2
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 4.9e-209 732.3 840 47.9
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 1.4e-208 730.7 902 46.7
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.6e-205 718.0 703 55.5
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.4e-203 713.4 795 50.1
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.9e-203 711.8 793 49.9
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 4.1e-195 686.0 772 49.9
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.7e-193 680.6 968 42.5
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.0e-177 628.2 534 59.0
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.2e-175 621.3 680 49.4
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 7.5e-173 612.1 544 57.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 7.0e-171 605.5 542 57.4
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 6.1e-167 592.4 612 51.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.0e-150 538.5 398 66.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.5e-122 443.7 481 47.4
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 6.6e-113 412.9 395 55.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 3.8e-84 317.4 493 43.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 8.2e-71 273.1 489 39.9
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.4e-65 255.8 415 42.2
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.4e-54 218.4 304 40.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-44 186.0 461 30.8
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.5e-43 180.6 157 52.2
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 9.5e-43 179.9 459 30.7
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 9.5e-43 179.9 459 30.7
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.8e-41 173.3 387 31.5
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 3.3e-35 154.8 116 66.4
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.2e-34 152.9 471 27.6
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.4e-33 149.4 113 65.5
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.4e-32 144.8 191 44.5
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-27 129.4 311 30.5
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 3.1e-25 121.7 405 26.9
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-19 102.8 480 25.6
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.5e-19 102.1 499 25.3
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.4e-15 87.4 148 33.1
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 6.6e-12 77.4 60 66.7
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.9e-11 75.9 478 23.4
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.5e-08 66.2 119 29.4
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 1.7e-07 62.8 160 29.4
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 3.8e-07 61.6 197 28.4
Cc09_g06700 Coffea canephora HOM05D003725 ORTHO05D004294 1.9e-06 59.3 199 26.1
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 2.4e-06 58.9 190 26.3
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 38.9
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 7.1e-06 57.4 78 35.9
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 7.1e-06 57.4 122 28.7
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.2e-06 57.0 308 23.4


User provided reference genes

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