Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 3.3e-125 451.8 249 100.0
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 3.4e-117 425.2 250 96.0
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 6.5e-113 411.0 249 92.0
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.0e-93 346.3 207 92.8
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 4.4e-77 292.0 252 72.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.2e-71 273.9 257 67.7
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.8e-63 245.4 363 49.9
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.5e-61 240.4 256 62.1
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.6e-61 239.6 364 50.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.1e-47 193.4 270 52.6
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.8e-46 190.3 288 51.0
BolC2t08091H Brassica oleracea HOM05D002831 ORTHO05D004341 1.5e-45 187.2 122 91.8
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.3e-41 174.1 250 52.8
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.9e-41 172.6 252 51.6
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 6.7e-41 171.8 287 49.1
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.3e-40 169.5 184 57.1
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 9.7e-40 167.9 181 60.2
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.8e-39 166.4 182 59.9
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.1e-38 164.5 181 58.6
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 4.1e-38 162.5 182 57.7
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.3e-38 162.2 181 58.6
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.3e-38 162.2 181 58.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 5.3e-38 162.2 183 58.5
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 9.0e-38 161.4 182 59.3
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.2e-37 161.0 179 58.1
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.0e-37 160.2 181 59.1
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 2.9e-36 156.4 171 62.0
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.9e-36 156.4 173 60.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.8e-36 156.0 200 51.0
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 5.0e-36 155.6 174 61.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.5e-36 155.2 192 52.6
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.1e-35 154.5 199 52.3
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.9e-35 153.7 198 52.0
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 4.2e-35 152.5 185 57.3
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.2e-35 152.5 196 52.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 4.2e-35 152.5 196 52.6
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 5.5e-35 152.1 181 58.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.4e-35 151.4 169 59.2
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.4e-33 147.5 198 48.5
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-33 147.5 192 49.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.8e-33 147.1 192 50.5
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-33 146.7 192 49.5
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 8.8e-33 144.8 192 49.0
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.5e-32 143.3 196 48.5
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.5e-32 143.3 193 48.7
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 2.5e-32 143.3 192 51.0
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 4.3e-32 142.5 196 49.0
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.4e-32 141.7 198 47.5
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.2e-31 140.2 194 49.0
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.8e-31 139.8 192 47.4
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 3.7e-31 139.4 189 51.3
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 4.8e-31 139.0 196 48.5
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 6.3e-31 138.7 193 50.3
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.1e-30 137.9 196 47.4
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.4e-30 137.5 191 47.6
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.4e-30 137.5 194 47.4
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 2.4e-30 136.7 184 53.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.9e-30 135.2 196 48.0
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.9e-30 135.2 196 48.0
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.2e-29 134.4 190 46.8
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.0e-29 133.7 187 48.1
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 4.5e-29 132.5 197 45.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 4.5e-29 132.5 197 45.2
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 5.9e-29 132.1 197 47.2
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 5.0e-28 129.0 200 46.5
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 6.5e-28 128.6 198 46.5
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 8.5e-28 128.3 194 45.4
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 8.5e-28 128.3 196 46.4
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.4e-27 127.5 196 42.9
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.9e-27 127.1 200 44.0
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 7.2e-27 125.2 198 43.9
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 7.2e-27 125.2 196 44.4
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.2e-26 124.4 199 45.7
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.2e-26 124.4 193 45.6
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.6e-26 124.0 196 42.3
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.1e-26 123.6 205 46.3
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 2.1e-26 123.6 198 46.5
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.6e-26 122.9 200 42.5
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.1e-26 122.1 172 51.7
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 7.9e-26 121.7 190 47.4
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 7.9e-26 121.7 196 44.9
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.0e-25 121.3 205 45.9
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.0e-25 121.3 208 44.2
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 1.4e-25 120.9 201 43.3
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-25 120.2 193 46.1
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.3e-25 120.2 193 46.1
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 2.3e-25 120.2 177 49.2
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.0e-25 119.8 172 51.2
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 3.9e-25 119.4 200 44.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 6.7e-25 118.6 199 43.7
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.7e-25 118.6 197 43.1
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.1e-24 117.9 197 42.6
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-24 117.5 172 49.4
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-24 117.5 193 45.6
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 2.0e-24 117.1 192 44.3
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 2.6e-24 116.7 198 41.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 5.7e-24 115.5 91 78.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 5.7e-24 115.5 91 78.0
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.7e-24 115.5 177 48.6
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.3e-23 114.4 197 42.6
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.7e-23 114.0 121 57.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.7e-23 114.0 195 43.1
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.2e-23 113.6 177 48.0
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.8e-23 113.2 204 49.0
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.8e-23 113.2 177 48.0
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 6.3e-23 112.1 194 43.3
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 8.2e-23 111.7 197 43.1
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 8.2e-23 111.7 181 45.9
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 5.3e-22 109.0 194 40.7
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 9.1e-22 108.2 197 41.6
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 9.1e-22 108.2 181 39.8
C02p19540 Brassica napus HOM05D002831 ORTHO05D004341 1.5e-21 107.5 65 93.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.6e-21 106.7 198 40.4
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 2.6e-21 106.7 186 41.4
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.4e-21 106.3 191 41.9
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 3.4e-21 106.3 195 44.1
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 3.4e-21 106.3 191 42.9
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.4e-21 106.3 177 45.2
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 5.9e-21 105.5 208 41.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 7.7e-21 105.1 193 42.5
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.7e-21 105.1 196 40.3
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 7.7e-21 105.1 167 46.1
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.3e-20 104.4 185 42.7
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 3.8e-20 102.8 180 43.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 3.8e-20 102.8 176 46.0
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 5.0e-20 102.4 145 45.5
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 6.5e-20 102.1 181 44.8
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 6.5e-20 102.1 181 43.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.5e-20 101.7 196 38.3
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.1e-19 101.3 191 41.9
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.1e-19 101.3 195 40.0
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.9e-19 100.5 189 40.7
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 3.2e-19 99.8 189 43.9
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.2e-19 99.8 106 56.6
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 7.2e-19 98.6 146 43.2
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.6e-18 97.4 145 49.0
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.1e-18 97.1 181 44.2
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.1e-18 97.1 90 64.4
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.7e-18 96.7 199 38.7
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.6e-18 96.3 184 41.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.7e-18 95.9 90 64.4
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 8.0e-18 95.1 189 42.3
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.0e-17 94.7 199 39.2
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 8.8e-17 91.7 88 68.2
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.5e-16 90.9 169 45.6
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 1.5e-16 90.9 183 42.1
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.6e-16 90.1 168 46.4
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 5.7e-16 89.0 199 37.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 5.7e-16 89.0 199 34.7
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 5.7e-16 89.0 178 42.1
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.2e-15 87.0 199 35.2
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.2e-15 87.0 199 35.2
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.2e-15 87.0 197 38.1
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 2.8e-15 86.7 174 39.7
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 4.8e-15 85.9 181 42.0
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.3e-15 85.5 199 35.2
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 8.2e-15 85.1 82 63.4
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-14 84.7 199 34.7
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-14 84.7 131 45.8
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.4e-14 84.3 179 38.5
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.8e-14 84.0 199 34.7
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.1e-14 82.8 199 34.2
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.0e-13 80.5 194 36.1
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.6e-13 80.1 198 35.4
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 3.5e-13 79.7 60 81.7
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.0e-12 78.2 187 39.0
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.8e-12 76.3 192 37.5
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 6.5e-12 75.5 175 36.6
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 4.2e-11 72.8 196 36.7
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.4e-09 67.8 195 34.4
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 5.2e-09 65.9 196 33.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.2e-08 64.7 137 40.1
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.0e-08 63.9 194 32.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.0e-08 63.9 83 51.8
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 2.6e-08 63.5 130 47.7
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 9.7e-08 61.6 180 35.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.7e-07 60.8 130 36.2
BcaB03g12482 Brassica carinata HOM05D002831 ORTHO05D004341 1.1e-06 58.2 159 42.1
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.1e-06 58.2 195 30.8
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.4e-06 57.8 173 33.5
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 9.1e-06 55.1 105 40.0


User provided reference genes

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