Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p11470 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-53 212.6 100 100.0
C02p19100 Brassica napus HOM05D001603 ORTHO05D001393 3.7e-51 204.5 100 96.0
BolC2t08042H Brassica oleracea HOM05D001603 ORTHO05D001393 3.7e-51 204.5 100 96.0
C02p18940 Brassica napus HOM05D001603 ORTHO05D001393 8.3e-51 203.4 100 95.0
C02p19040 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-50 203.0 100 95.0
C02p19080 Brassica napus HOM05D001603 ORTHO05D001393 2.4e-50 201.8 100 95.0
C02p19130 Brassica napus HOM05D001603 ORTHO05D001393 2.4e-50 201.8 100 95.0
BcaC03g14476 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
BcaC03g14477 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
BcaC03g14480 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
A02p11420 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
A02p11430 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
A02p11450 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p18950 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p18990 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p19030 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p19070 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p19090 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p19110 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
BolC2t08038H Brassica oleracea HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
BolC2t08041H Brassica oleracea HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
BolC2t08043H Brassica oleracea HOM05D001603 ORTHO05D001393 2.5e-47 191.8 122 78.7
C02p18930 Brassica napus HOM05D001603 ORTHO05D001393 3.3e-47 191.4 122 77.9
BolC2t08034H Brassica oleracea HOM05D001603 ORTHO05D001393 5.6e-47 190.7 122 77.9
BraA02t06207Z Brassica rapa HOM05D001603 ORTHO05D001393 5.6e-47 190.7 122 77.0
BcaC03g14478 Brassica carinata HOM05D001603 ORTHO05D001393 7.3e-47 190.3 122 77.9
BraA02t06212Z Brassica rapa HOM05D001603 ORTHO05D001393 7.3e-47 190.3 122 77.9
C02p19050 Brassica napus HOM05D001603 ORTHO05D001393 9.5e-47 189.9 122 77.9
A02p11440 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-46 189.5 122 77.9
BraA02t06205Z Brassica rapa HOM05D001603 ORTHO05D001393 1.2e-46 189.5 122 77.0
C02p18920 Brassica napus HOM05D001603 ORTHO05D001393 2.8e-46 188.3 122 77.0
A02p11460 Brassica napus HOM05D001603 ORTHO05D001393 3.6e-46 188.0 122 77.9
BolC2t08037H Brassica oleracea HOM05D001603 ORTHO05D001393 3.6e-46 188.0 122 77.9
BcaC03g14475 Brassica carinata HOM05D001603 ORTHO05D001393 4.7e-46 187.6 122 77.0
A02p11400 Brassica napus HOM05D001603 ORTHO05D001393 4.7e-46 187.6 122 77.0
C02p19000 Brassica napus HOM05D001603 ORTHO05D001393 6.2e-46 187.2 122 77.0
C02p19140 Brassica napus HOM05D001603 ORTHO05D001393 6.2e-46 187.2 122 77.0
BolC2t08033H Brassica oleracea HOM05D001603 ORTHO05D001393 6.2e-46 187.2 122 77.0
BraA02t06208Z Brassica rapa HOM05D001603 ORTHO05D001393 6.2e-46 187.2 122 76.2
C02p18980 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-45 186.4 122 77.0
BraA02t06210Z Brassica rapa HOM05D001603 ORTHO05D001393 1.1e-45 186.4 122 76.2
BcaC03g14474 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-45 186.0 122 76.2
BraA02t06209Z Brassica rapa HOM05D001603 ORTHO05D001393 1.4e-45 186.0 122 76.2
C02p18970 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-45 185.3 122 77.0
BraA02t06204Z Brassica rapa HOM05D001603 ORTHO05D001393 3.1e-45 184.9 122 76.2
BolC2t08039H Brassica oleracea HOM05D001603 ORTHO05D001393 6.8e-45 183.7 122 77.0
BcaC03g14473 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-44 183.0 122 75.4
BraA02t06206Z Brassica rapa HOM05D001603 ORTHO05D001393 2.6e-44 181.8 122 75.4
BolC2t08036H Brassica oleracea HOM05D001603 ORTHO05D001393 2.9e-43 178.3 122 74.6
C02p19020 Brassica napus HOM05D001603 ORTHO05D001393 3.7e-43 177.9 122 75.4
BcaB05g21994 Brassica carinata HOM05D001603 ORTHO05D001393 6.4e-43 177.2 122 73.0
BolC2t08044H Brassica oleracea HOM05D001603 ORTHO05D001393 8.3e-43 176.8 122 74.6
BcaB05g21995 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-42 174.1 122 72.1
BraA02t06211Z Brassica rapa HOM05D001603 ORTHO05D001393 3.5e-41 171.4 111 76.6
BcaC03g14479 Brassica carinata HOM05D001603 ORTHO05D001393 3.0e-40 168.3 100 83.0
A02p11410 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-39 166.4 109 77.1
Sp6g15130 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.8e-37 159.1 122 63.9
AT5G52975 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.9e-37 156.8 123 63.4
Thhalv10005396m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.2e-36 156.4 122 63.9
Carub.0004s0795 Capsella rubella HOM05D001603 ORTHO05D001393 3.4e-36 154.8 122 59.8
AL8G27490 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 7.6e-36 153.7 122 61.5
AL8G27470 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 9.9e-36 153.3 122 61.5
Thhalv10005546m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 9.9e-36 153.3 122 62.3
CARHR265940 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.3e-35 152.9 123 63.4
AT5G52965 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-34 149.4 122 59.8
AL4G21270 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 2.4e-34 148.7 122 60.7
Thhalv10029475m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.4e-34 148.7 122 61.5
CARHR119910 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.2e-34 148.3 122 60.7
Carub.0008s0802 Capsella rubella HOM05D001603 ORTHO05D001393 4.2e-34 147.9 122 59.8
AL8G27510 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 7.1e-34 147.1 122 60.7
C02p19010 Brassica napus HOM05D001603 ORTHO05D001393 9.2e-34 146.7 73 94.5
BcaC03g14471 Brassica carinata HOM05D001603 ORTHO05D001393 3.5e-33 144.8 95 72.6
Carub.0008s1317 Capsella rubella HOM05D001603 ORTHO05D001393 6.0e-33 144.1 122 58.2
Sp6g09890 Schrenkiella parvula HOM05D001603 ORTHO05D001393 3.0e-32 141.7 122 58.2
Carub.0008s2423 Capsella rubella HOM05D001603 ORTHO05D001393 3.9e-32 141.4 122 57.4
CARHR265960 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.5e-31 139.4 123 58.5
A02p42790 Brassica napus HOM05D001603 ORTHO05D001393 4.3e-31 137.9 122 57.4
BraA02t09205Z Brassica rapa HOM05D001603 ORTHO05D001393 4.3e-31 137.9 122 57.4
AT2G27315 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.6e-30 136.0 122 57.4
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.5e-28 129.4 118 54.2
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.6e-28 128.6 118 53.4
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 4.4e-28 127.9 117 54.7
Carub.0007s0514 Capsella rubella HOM05D001603 ORTHO05D001393 5.8e-28 127.5 121 51.2
C03p34370 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-27 126.3 122 54.1
BolC3t15747H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-27 126.3 122 54.1
A03p28440 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-27 125.9 122 54.1
BraA03t12049Z Brassica rapa HOM05D001603 ORTHO05D001393 1.7e-27 125.9 122 54.1
Carub.0008s2422 Capsella rubella HOM05D001603 ORTHO05D001393 3.2e-26 121.7 122 52.5
CARHR266380 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.2e-26 121.3 107 55.1
Carub.0008s1315 Capsella rubella HOM05D001603 ORTHO05D001393 2.7e-25 118.6 102 57.8
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 3.5e-25 118.2 120 51.7
CARHR243480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.3e-24 115.5 116 49.1
AL8G40580 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.6e-24 114.0 118 49.2
BolC2t08040H Brassica oleracea HOM05D001603 ORTHO05D001393 6.6e-24 114.0 59 94.9
CARHR277370 Cardamine hirsuta HOM05D001603 ORTHO05D001393 6.6e-24 114.0 113 50.4
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 1.9e-23 112.5 112 50.9
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-23 112.1 111 49.5
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 2.5e-23 112.1 111 49.5
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 9.6e-23 110.2 111 49.5
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 9.6e-23 110.2 111 49.5
Thhalv10029307m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.6e-22 109.4 97 56.7
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 2.1e-22 109.0 111 49.5
CARHR042990 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.8e-22 108.6 114 46.5
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 1.4e-21 106.3 118 49.2
Thhalv10029285m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.4e-21 105.5 97 55.7
Sp2g17840 Schrenkiella parvula HOM05D001603 ORTHO05D001393 2.4e-21 105.5 120 49.2
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 3.1e-21 105.1 115 46.1
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-19 98.2 115 45.2
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 3.8e-19 98.2 115 45.2
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.4e-19 97.4 105 46.7
A02p42780 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-18 96.3 112 43.8
BraA02t09204Z Brassica rapa HOM05D001603 ORTHO05D001393 1.4e-18 96.3 112 43.8
BcaB07g29691 Brassica carinata HOM05D001603 ORTHO05D001393 1.9e-18 95.9 83 55.4
BcaC03g18210 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-18 94.4 76 55.3
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.3e-16 89.7 113 44.2
AT5G53905 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.3e-16 89.0 71 54.9
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.0e-16 88.6 117 39.3
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 5.1e-16 87.8 117 41.9
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 5.1e-16 87.8 126 37.3
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 6.7e-16 87.4 119 42.0
A03p15020 Brassica napus HOM05D001603 ORTHO05D001393 8.7e-16 87.0 112 39.3
C03p17510 Brassica napus HOM05D001603 ORTHO05D001393 8.7e-16 87.0 112 39.3
BolC3t14164H Brassica oleracea HOM05D001603 ORTHO05D001393 8.7e-16 87.0 112 39.3
BraA03t10796Z Brassica rapa HOM05D001603 ORTHO05D001393 8.7e-16 87.0 112 39.3
Carub.0008s1421 Capsella rubella HOM05D001603 ORTHO05D001393 1.1e-15 86.7 117 38.5
CARHR157430 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.9e-15 85.9 111 40.5
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.5e-15 85.5 112 38.4
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 3.3e-15 85.1 125 36.0
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.3e-15 85.1 112 38.4
BcaC01g06264 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-14 83.2 112 38.4
Thhalv10016069m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.1e-14 82.4 110 41.8
CARHR267040 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.7e-14 81.6 110 38.2
BcaC02g08400 Brassica carinata HOM05D001603 ORTHO05D001393 4.8e-14 81.3 110 41.8
BcaC02g08407 Brassica carinata HOM05D001603 ORTHO05D001393 4.8e-14 81.3 110 41.8
BolC4t27003H Brassica oleracea HOM05D001603 ORTHO05D001393 4.8e-14 81.3 110 41.8
BolC4t27006H Brassica oleracea HOM05D001603 ORTHO05D001393 4.8e-14 81.3 110 41.8
BolC4t27013H Brassica oleracea HOM05D001603 ORTHO05D001393 4.8e-14 81.3 110 41.8
BcaC02g08401 Brassica carinata HOM05D001603 ORTHO05D001393 6.2e-14 80.9 110 41.8
BolC4t27011H Brassica oleracea HOM05D001603 ORTHO05D001393 6.2e-14 80.9 110 41.8
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 6.2e-14 80.9 110 38.2
C04p54650 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-13 79.7 110 41.8
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 2.4e-13 79.0 109 35.8
BolC2t08032H Brassica oleracea HOM05D001603 ORTHO05D001393 3.1e-13 78.6 121 41.3
C04p54670 Brassica napus HOM05D001603 ORTHO05D001393 4.0e-13 78.2 109 39.4
Duzib187G1233 Durio zibethinus HOM05D001603 ORTHO05D001393 4.0e-13 78.2 116 37.1
BcaC02g08405 Brassica carinata HOM05D001603 ORTHO05D001393 5.3e-13 77.8 90 47.8
C04p54600 Brassica napus HOM05D001603 ORTHO05D001393 5.3e-13 77.8 110 41.8
C04p54690 Brassica napus HOM05D001603 ORTHO05D001393 5.3e-13 77.8 90 47.8
CARHR267050 Cardamine hirsuta HOM05D001603 ORTHO05D001393 6.9e-13 77.4 71 49.3
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 9.0e-13 77.0 109 36.7
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 1.5e-12 76.3 107 36.4
BcaB01g04253 Brassica carinata HOM05D001603 ORTHO05D001393 2.0e-12 75.9 70 51.4
BcaC02g08403 Brassica carinata HOM05D001603 ORTHO05D001393 3.4e-12 75.1 90 46.7
C04p53860 Brassica napus HOM05D001603 ORTHO05D001393 7.6e-12 73.9 81 48.1
AT5G53742 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.0e-11 73.6 79 46.8
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.7e-11 72.8 112 33.0
RcHm_v2.0_Chr2g0131221 Rosa chinensis HOM05D001603 ORTHO05D001393 2.2e-11 72.4 108 35.2
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 1.4e-10 69.7 117 36.8
FvH4_4g12560 Fragaria vesca HOM05D001603 ORTHO05D001393 1.9e-10 69.3 109 38.5
FAN12G3546 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.9e-10 69.3 109 38.5
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.9e-10 69.3 112 34.8
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 2.5e-10 68.9 108 34.3
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.6e-09 66.2 72 43.1
FvH4_1g02090 Fragaria vesca HOM05D001603 ORTHO05D001393 1.6e-09 66.2 112 34.8
RcHm_v2.0_Chr2g0149601 Rosa chinensis HOM05D001603 ORTHO05D001393 1.6e-09 66.2 113 34.5
C02p19060 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-09 65.1 38 89.5
FAN17G1385 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.6e-09 64.7 107 36.4
FAN19G2115 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.6e-09 64.7 107 35.5
FAN22G0761 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.6e-09 64.7 112 36.6
FAN07G1734 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.3e-08 63.2 112 35.7
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 1.3e-08 63.2 97 36.1
FAN06G4924 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.8e-08 62.8 109 34.9
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 2.3e-08 62.4 121 33.1
RcHm_v2.0_Chr1g0323971 Rosa chinensis HOM05D001603 ORTHO05D001393 2.3e-08 62.4 107 32.7
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 5.1e-08 61.2 111 34.2
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 1.9e-07 59.3 115 33.0
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.9e-07 59.3 72 37.5
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.9e-07 59.3 105 34.3
FAN05G1005 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.5e-07 58.9 87 39.1
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 4.3e-07 58.2 87 35.6
Aqoxy1G00790 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 7.4e-07 57.4 86 34.9
FAN28G2563 Fragaria x ananassa HOM05D001603 ORTHO05D001393 7.4e-07 57.4 91 38.5
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.3e-06 56.6 75 37.3
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 1.6e-06 56.2 88 31.8
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 2.1e-06 55.8 82 35.4
vmacro07747 Vaccinium macrocarpon HOM05D001603 ORTHO05D001393 2.1e-06 55.8 101 31.7
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-06 55.5 75 36.0
Gorai.004G109100 Gossypium raimondii HOM05D001603 ORTHO05D001393 3.7e-06 55.1 103 33.0
Aqoxy6G02760 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 4.8e-06 54.7 63 39.7
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 4.8e-06 54.7 64 37.5
Gorai.013G023700 Gossypium raimondii HOM05D001603 ORTHO05D001393 4.8e-06 54.7 75 36.0
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 6.2e-06 54.3 74 35.1
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 8.2e-06 53.9 63 41.3


User provided reference genes

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