Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p11070 Brassica napus HOM05D003276 ORTHO05D033260 3.0e-47 191.4 93 100.0
BolC2t07977H Brassica oleracea HOM05D003276 ORTHO05D003809 1.2e-46 189.5 93 98.9
BcaB05g22038 Brassica carinata HOM05D003276 ORTHO05D003809 1.4e-39 166.0 93 89.2
BcaC03g14424 Brassica carinata HOM05D003276 ORTHO05D003809 2.5e-33 145.2 69 100.0
C02p18370 Brassica napus HOM05D003276 ORTHO05D033260 2.5e-33 145.2 75 92.0
Sp6g15550 Schrenkiella parvula HOM05D003276 ORTHO05D003809 1.9e-28 129.0 69 89.9
BcaC04g20454 Brassica carinata HOM05D003276 ORTHO05D003809 3.3e-25 118.2 69 84.1
C09p43280 Brassica napus HOM05D003276 ORTHO05D003809 3.3e-25 118.2 69 84.1
BolC9t57209H Brassica oleracea HOM05D003276 ORTHO05D003809 3.3e-25 118.2 69 84.1
Thhalv10014378m.g Eutrema salsugineum HOM05D003276 ORTHO05D003809 5.6e-25 117.5 69 84.1
A10p10890 Brassica napus HOM05D003276 ORTHO05D003809 1.2e-24 116.3 69 82.6
BraA10t43177Z Brassica rapa HOM05D003276 ORTHO05D003809 1.2e-24 116.3 69 82.6
BcaC01g06251 Brassica carinata HOM05D003276 ORTHO05D003809 1.2e-22 109.8 69 75.4
AL8G28120 Arabidopsis lyrata HOM05D003276 ORTHO05D003809 2.6e-22 108.6 69 79.7
BcaNung05986 Brassica carinata HOM05D003276 ORTHO05D003809 9.9e-22 106.7 69 72.5
Carub.0008s1358 Capsella rubella HOM05D003276 ORTHO05D003809 1.3e-21 106.3 69 76.8
Aa31LG3G9590 Aethionema arabicum HOM05D003276 ORTHO05D003809 4.9e-21 104.4 69 73.9
BraA02t06171Z Brassica rapa HOM05D003276 ORTHO05D033260 8.4e-21 103.6 48 100.0
CARHR266540 Cardamine hirsuta HOM05D003276 ORTHO05D003809 2.4e-20 102.1 67 77.6
AL7G24730 Arabidopsis lyrata HOM05D003276 ORTHO05D003809 3.4e-14 81.6 67 64.2
Sp7g25870 Schrenkiella parvula HOM05D003276 ORTHO05D003809 4.4e-14 81.3 69 60.9
BraA08t33990Z Brassica rapa HOM05D003276 ORTHO05D003809 2.2e-13 79.0 67 61.2
Thhalv10026081m.g Eutrema salsugineum HOM05D003276 ORTHO05D003809 2.9e-13 78.6 69 59.4
Carub.0007s1292 Capsella rubella HOM05D003276 ORTHO05D003809 3.8e-13 78.2 67 61.2
C08p10410 Brassica napus HOM05D003276 ORTHO05D003809 4.9e-13 77.8 67 59.7
A08p20320 Brassica napus HOM05D003276 ORTHO05D003809 1.1e-12 76.6 67 59.7
AT4G27900 Arabidopsis thaliana HOM05D003276 ORTHO05D003809 1.4e-12 76.3 68 61.8
THA.LOC104825142 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 3.2e-12 75.1 70 52.9
BcaNung01613 Brassica carinata HOM05D003276 ORTHO05D003809 4.2e-12 74.7 69 52.2
BolC8t48727H Brassica oleracea HOM05D003276 ORTHO05D003809 5.4e-12 74.3 67 56.7
BcaB03g12546 Brassica carinata HOM05D003276 ORTHO05D003809 4.6e-11 71.2 67 56.7
THA.LOC104811921 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 2.3e-10 68.9 71 52.1
THA.LOC104800294 Tarenaya hassleriana HOM05D003276 ORTHO05D003809 5.1e-10 67.8 69 49.3
CARHR235600 Cardamine hirsuta HOM05D003276 ORTHO05D003809 1.1e-09 66.6 56 62.5
PGR042G2895 Punica granatum HOM05D003276 ORTHO05D003809 5.6e-09 64.3 67 49.3
Nitab4.5_0015164g0010 Nicotiana tabacum HOM05D003276 ORTHO05D003809 1.3e-08 63.2 69 50.7
COL.COLO4_11268 Corchorus olitorius HOM05D003276 ORTHO05D003809 1.6e-08 62.8 69 49.3
Duzib084G0491 Durio zibethinus HOM05D003276 ORTHO05D003809 2.8e-08 62.0 69 49.3
Thecc.03G197500 Theobroma cacao HOM05D003276 ORTHO05D003809 4.8e-08 61.2 69 47.8
Gohir.A11G014700 Gossypium hirsutum HOM05D003276 ORTHO05D003809 6.2e-08 60.8 69 47.8
Gohir.D11G014800 Gossypium hirsutum HOM05D003276 ORTHO05D003809 6.2e-08 60.8 69 47.8
Gorai.007G015200 Gossypium raimondii HOM05D003276 ORTHO05D003809 6.2e-08 60.8 69 47.8
Atru.chr2.1747 Acer truncatum HOM05D003276 ORTHO05D003809 8.1e-08 60.5 69 46.4
Nitab4.5_0001520g0010 Nicotiana tabacum HOM05D003276 ORTHO05D003809 8.1e-08 60.5 69 50.7
Gorai.004G111500 Gossypium raimondii HOM05D003276 ORTHO05D003809 1.1e-07 60.1 67 50.7
Gohir.D04G001900 Gossypium hirsutum HOM05D003276 ORTHO05D003809 1.4e-07 59.7 69 49.3
Gorai.012G003000 Gossypium raimondii HOM05D003276 ORTHO05D003809 1.4e-07 59.7 69 49.3
HanXRQChr07g0206531 Helianthus annuus HOM05D003276 ORTHO05D003809 1.4e-07 59.7 69 43.5
Sc13g0009790 Simmondsia chinensis HOM05D003276 ORTHO05D003809 1.4e-07 59.7 69 44.9
CSS0039935 Camellia sinensis var. sinensis HOM05D003276 ORTHO05D003809 1.8e-07 59.3 67 49.3
Gohir.A05G414200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 2.4e-07 58.9 69 46.4
Gohir.A08G093600 Gossypium hirsutum HOM05D003276 ORTHO05D003809 2.4e-07 58.9 67 49.3
Manes.14G006300 Manihot esculenta HOM05D003276 ORTHO05D003809 2.4e-07 58.9 69 47.8
TWI39G0294 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 2.4e-07 58.9 73 46.6
Migut.F00223 Erythranthe guttata HOM05D003276 ORTHO05D003809 3.1e-07 58.5 68 44.1
HanXRQChr13g0393101 Helianthus annuus HOM05D003276 ORTHO05D003809 3.1e-07 58.5 69 43.5
Lalb_Chr08g0240291 Lupinus albus HOM05D003276 ORTHO05D003809 3.1e-07 58.5 68 44.1
Manes.06G159900 Manihot esculenta HOM05D003276 ORTHO05D003809 3.1e-07 58.5 69 47.8
Solyc03g083400.3 Solanum lycopersicum HOM05D003276 ORTHO05D003809 3.1e-07 58.5 69 49.3
Sopen03g023170 Solanum pennellii HOM05D003276 ORTHO05D003809 3.1e-07 58.5 69 49.3
TWI23G0585 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 3.1e-07 58.5 73 47.9
Gohir.D08G104200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 4.0e-07 58.2 67 49.3
CSS0035082 Camellia sinensis var. sinensis HOM05D003276 ORTHO05D003809 5.3e-07 57.8 68 50.0
Lalb_Chr11g0066821 Lupinus albus HOM05D003276 ORTHO05D003809 5.3e-07 57.8 67 44.8
Rhsim09G0205200 Rhododendron simsii HOM05D003276 ORTHO05D003809 5.3e-07 57.8 67 46.3
PGSC0003DMG400009122 Solanum tuberosum HOM05D003276 ORTHO05D003809 5.3e-07 57.8 69 47.8
Aqoxy7G00091 Aquilegia oxysepala HOM05D003276 ORTHO05D003809 6.9e-07 57.4 69 46.4
Cpa.g.sc3.74 Carica papaya HOM05D003276 ORTHO05D003809 6.9e-07 57.4 69 44.9
Gohir.A12G250400 Gossypium hirsutum HOM05D003276 ORTHO05D003809 6.9e-07 57.4 69 44.9
Gohir.D12G251200 Gossypium hirsutum HOM05D003276 ORTHO05D003809 6.9e-07 57.4 69 44.9
Gorai.008G269300 Gossypium raimondii HOM05D003276 ORTHO05D003809 6.9e-07 57.4 69 44.9
Lalb_Chr23g0271581 Lupinus albus HOM05D003276 ORTHO05D003809 6.9e-07 57.4 67 43.3
Dinv35326 Davidia involucrata HOM05D003276 ORTHO05D003809 9.0e-07 57.0 69 44.9
TAR375G0207 Trochodendron aralioides HOM05D003276 ORTHO05D003809 9.0e-07 57.0 67 44.8
TAR375G0411 Trochodendron aralioides HOM05D003276 ORTHO05D003809 9.0e-07 57.0 67 44.8
vmacro10116 Vaccinium macrocarpon HOM05D003276 ORTHO05D003809 9.0e-07 57.0 69 44.9
Ah.13g070160 Amaranthus hybridus HOM05D003276 ORTHO05D003809 1.2e-06 56.6 70 42.9
Haze_00224 Corylus avellana HOM05D003276 ORTHO05D003809 1.2e-06 56.6 69 44.9
Lsat_1_v5_gn_2_135961 Lactuca sativa HOM05D003276 ORTHO05D003809 1.2e-06 56.6 69 43.5
MD01G1220400 Malus domestica HOM05D003276 ORTHO05D003809 1.5e-06 56.2 67 43.3
Cc02_g01650 Coffea canephora HOM05D003276 ORTHO05D003809 2.0e-06 55.8 73 43.8
Potri.015G014000 Populus trichocarpa HOM05D003276 ORTHO05D003809 2.0e-06 55.8 69 46.4
QL09p009452 Quercus lobata HOM05D003276 ORTHO05D003809 2.0e-06 55.8 69 44.9
TWI14G1218 Tripterygium wilfordii HOM05D003276 ORTHO05D003809 2.0e-06 55.8 73 46.6
Eucgr.K00370 Eucalyptus grandis HOM05D003276 ORTHO05D003809 2.6e-06 55.5 67 44.8
MD07G1289700 Malus domestica HOM05D003276 ORTHO05D003809 2.6e-06 55.5 67 41.8
Prupe.2G310900 Prunus persica HOM05D003276 ORTHO05D003809 2.6e-06 55.5 67 43.3
GSVIVG01038707001 Vitis vinifera HOM05D003276 ORTHO05D003809 2.6e-06 55.5 70 42.9
Hma1.2p1_1188F.1_g265270 Hydrangea macrophylla HOM05D003276 ORTHO05D003809 3.4e-06 55.1 67 50.7
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 4.4e-06 54.7 68 45.6
CAN.G108.69 Capsicum annuum HOM05D003276 ORTHO05D003809 4.4e-06 54.7 69 43.5
AUR62006104 Chenopodium quinoa HOM05D003276 ORTHO05D003809 4.4e-06 54.7 69 43.5
Duzib068G1205 Durio zibethinus HOM05D003276 ORTHO05D003809 4.4e-06 54.7 88 37.5
FAN06G1499 Fragaria x ananassa HOM05D003276 ORTHO05D003809 4.4e-06 54.7 69 40.6
FAN06G2573 Fragaria x ananassa HOM05D003276 ORTHO05D003809 4.4e-06 54.7 69 40.6
Phvul.009G053300 Phaseolus vulgaris HOM05D003276 ORTHO05D003809 4.4e-06 54.7 72 41.7
Rhsim03G0208000 Rhododendron simsii HOM05D003276 ORTHO05D003809 4.4e-06 54.7 67 46.3
PGR142G2099 Punica granatum HOM05D003276 ORTHO05D003809 5.8e-06 54.3 69 46.4
CiPaw.05G251300 Carya illinoinensis HOM05D003276 ORTHO05D003809 7.6e-06 53.9 69 42.0
Sabra15G0011600 Salix brachista HOM05D003276 ORTHO05D003809 7.6e-06 53.9 67 46.3
Hund20995 Selenicereus undatus HOM05D003276 ORTHO05D003809 7.6e-06 53.9 67 44.8
Glyma.04G236400 Glycine max HOM05D003276 ORTHO05D003809 9.9e-06 53.5 69 40.6
Hma1.2p1_0404F.1_g145470 Hydrangea macrophylla HOM05D003276 ORTHO05D003809 9.9e-06 53.5 69 43.5
Lj3C906G18 Lonicera japonica HOM05D003276 ORTHO05D003809 9.9e-06 53.5 69 44.9


User provided reference genes

Program Settings