Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 2.3e-191 672.5 476 100.0
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 1.8e-188 662.9 476 98.9
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 7.2e-169 597.8 362 91.7
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 8.0e-168 594.3 361 91.7
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 2.0e-166 589.7 362 91.2
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 3.6e-120 436.0 374 73.8
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 5.3e-111 405.6 393 67.2
Thhalv10013275m.g Eutrema salsugineum HOM05D012500 ORTHO05D009211 2.7e-83 313.5 379 58.0
AL8G29040 Arabidopsis lyrata HOM05D012500 ORTHO05D009211 3.6e-83 313.2 408 54.9
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 8.7e-82 308.5 407 54.3
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 1.1e-79 301.6 404 54.7
CARHR267070 Cardamine hirsuta HOM05D012500 ORTHO05D009211 8.8e-66 255.4 353 55.8
Aa31LG3G10020 Aethionema arabicum HOM05D012500 ORTHO05D009211 1.8e-42 177.9 373 40.5
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 1.7e-40 171.4 317 43.8
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.6e-14 85.1 386 27.7
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.6e-14 85.1 308 31.8
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 4.6e-14 83.6 411 26.8
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 6.0e-14 83.2 386 27.5
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 6.0e-14 83.2 413 25.9
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 7.8e-14 82.8 404 27.0
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 1.7e-13 81.6 413 25.9
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 6.6e-13 79.7 385 30.6
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 8.6e-13 79.3 342 27.8
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 1.1e-12 79.0 326 28.8
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.5e-12 77.8 414 28.0
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 3.3e-12 77.4 285 31.6
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 5.6e-12 76.6 353 27.8
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 9.5e-12 75.9 372 28.8
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.6e-11 75.1 286 32.5
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.1e-11 74.7 289 30.4
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.6e-11 73.9 321 31.2
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 1.1e-10 72.4 321 29.0
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.4e-10 72.0 265 30.6
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 1.4e-10 72.0 395 25.3
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.4e-10 71.2 300 29.0
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 3.1e-10 70.9 328 26.8
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 4.0e-10 70.5 285 29.5
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 4.0e-10 70.5 109 45.9
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 6.8e-10 69.7 321 29.6
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 8.9e-10 69.3 375 29.1
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 1.2e-09 68.9 65 64.6
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 1.2e-09 68.9 381 25.7
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 2.0e-09 68.2 80 47.5
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 2.0e-09 68.2 453 25.2
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 2.0e-09 68.2 60 61.7
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 2.6e-09 67.8 141 35.5
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 3.4e-09 67.4 345 25.2
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 4.4e-09 67.0 317 29.0
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 7.6e-09 66.2 387 25.1
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 7.6e-09 66.2 78 48.7
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 7.6e-09 66.2 359 28.7
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 9.9e-09 65.9 428 25.7
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.3e-08 65.5 421 24.0
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 2.2e-08 64.7 40 80.0
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 2.2e-08 64.7 394 26.1
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 2.9e-08 64.3 102 44.1
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 2.9e-08 64.3 507 24.3
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 2.9e-08 64.3 66 57.6
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 4.9e-08 63.5 420 27.1
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 6.4e-08 63.2 431 27.8
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 6.4e-08 63.2 72 52.8
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 8.4e-08 62.8 216 30.6
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.1e-07 62.4 367 27.2
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 1.4e-07 62.0 158 32.3
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.9e-07 61.6 84 46.4
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 2.4e-07 61.2 312 27.9
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 2.4e-07 61.2 396 26.0
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 2.4e-07 61.2 271 30.3
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 3.2e-07 60.8 72 51.4
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 4.1e-07 60.5 260 28.1
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 7.1e-07 59.7 323 25.4
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 2.1e-06 58.2 260 28.8
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 4.6e-06 57.0 422 24.6
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 4.6e-06 57.0 381 27.0


User provided reference genes

Program Settings