Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p09920 Brassica napus HOM05D001434 ORTHO05D004586 2.3e-111 405.6 205 100.0
BraA02t06056Z Brassica rapa HOM05D001434 ORTHO05D004586 2.3e-111 405.6 205 100.0
BolC2t07748H Brassica oleracea HOM05D001434 ORTHO05D004586 2.1e-88 329.3 250 74.0
Sp6g17000 Schrenkiella parvula HOM05D001434 ORTHO05D004586 3.1e-84 315.5 256 69.9
C02p16470 Brassica napus HOM05D001434 ORTHO05D004586 5.8e-83 311.2 241 73.4
Thhalv10012904m.g Eutrema salsugineum HOM05D001434 ORTHO05D004586 6.4e-82 307.8 256 67.6
BcaB08g35869 Brassica carinata HOM05D001434 ORTHO05D004586 3.2e-81 305.4 258 68.2
C09p45620 Brassica napus HOM05D001434 ORTHO05D004586 2.7e-80 302.4 257 67.7
AT5G55060 Arabidopsis thaliana HOM05D001434 ORTHO05D004586 3.5e-80 302.0 257 68.1
BraA10t43329Z Brassica rapa HOM05D001434 ORTHO05D004586 3.5e-80 302.0 257 67.7
BolC9t57432H Brassica oleracea HOM05D001434 ORTHO05D004586 7.9e-80 300.8 254 68.1
BcaC04g20273 Brassica carinata HOM05D001434 ORTHO05D004586 2.3e-79 299.3 257 67.3
CARHR268410 Cardamine hirsuta HOM05D001434 ORTHO05D004586 2.3e-79 299.3 257 66.9
A10p12360 Brassica napus HOM05D001434 ORTHO05D004586 6.7e-79 297.7 254 67.7
AL8G30560 Arabidopsis lyrata HOM05D001434 ORTHO05D004586 1.1e-78 297.0 257 66.9
Aa31LG3G10990 Aethionema arabicum HOM05D001434 ORTHO05D004586 1.4e-76 290.0 255 64.7
Carub.0008s1533 Capsella rubella HOM05D001434 ORTHO05D004586 4.5e-75 285.0 257 65.4
THA.LOC104811616 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 1.2e-64 250.4 254 59.4
C03p16670 Brassica napus HOM05D001434 ORTHO05D004586 2.7e-64 249.2 242 60.7
BcaC01g06341 Brassica carinata HOM05D001434 ORTHO05D004586 2.3e-63 246.1 227 63.4
BolC3t14087H Brassica oleracea HOM05D001434 ORTHO05D004586 2.3e-63 246.1 227 63.4
A03p14290 Brassica napus HOM05D001434 ORTHO05D004586 3.0e-63 245.7 227 63.0
BraA03t10726Z Brassica rapa HOM05D001434 ORTHO05D004586 6.7e-63 244.6 227 62.6
THA.LOC104817673 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 9.6e-62 240.7 256 57.8
BcaC03g14270 Brassica carinata HOM05D001434 ORTHO05D004586 2.1e-56 223.0 188 68.6
Cpa.g.sc12.281 Carica papaya HOM05D001434 ORTHO05D004586 2.1e-56 223.0 260 51.2
Cfa020319 Carpinus fangiana HOM05D001434 ORTHO05D004586 3.6e-56 222.2 252 53.2
ClCG10G004950 Citrullus lanatus HOM05D001434 ORTHO05D004586 1.0e-55 220.7 254 50.0
Duzib213G0248 Durio zibethinus HOM05D001434 ORTHO05D004586 3.0e-55 219.2 261 48.7
QL08p009425 Quercus lobata HOM05D001434 ORTHO05D004586 6.7e-55 218.0 257 49.8
Thecc.07G033300 Theobroma cacao HOM05D001434 ORTHO05D004586 8.7e-55 217.6 256 50.0
CiPaw.12G131400 Carya illinoinensis HOM05D001434 ORTHO05D004586 1.5e-54 216.9 257 51.4
Potri.011G089300 Populus trichocarpa HOM05D001434 ORTHO05D004586 1.5e-54 216.9 258 51.2
MELO3C014157.2 Cucumis melo HOM05D001434 ORTHO05D004586 3.3e-54 215.7 254 49.6
Sed0001205 Sechium edule HOM05D001434 ORTHO05D004586 4.3e-54 215.3 254 50.0
CsaV3_3G004600 Cucumis sativus L. HOM05D001434 ORTHO05D004586 5.7e-54 214.9 254 48.8
Haze_09703 Corylus avellana HOM05D001434 ORTHO05D004586 1.3e-53 213.8 242 54.1
Sabra11G0093800 Salix brachista HOM05D001434 ORTHO05D004586 8.2e-53 211.1 258 50.8
COL.COLO4_09683 Corchorus olitorius HOM05D001434 ORTHO05D004586 1.4e-52 210.3 251 48.6
GSVIVG01037676001 Vitis vinifera HOM05D001434 ORTHO05D004586 5.3e-52 208.4 258 48.1
Ca_14751_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 2.0e-51 206.5 259 48.3
Gohir.D05G372500 Gossypium hirsutum HOM05D001434 ORTHO05D004586 2.0e-51 206.5 261 47.1
Gorai.009G440800 Gossypium raimondii HOM05D001434 ORTHO05D004586 2.0e-51 206.5 261 47.1
Manes.15G070100 Manihot esculenta HOM05D001434 ORTHO05D004586 2.0e-51 206.5 255 47.5
FvH4_3g23020 Fragaria vesca HOM05D001434 ORTHO05D004586 3.4e-51 205.7 261 46.0
FAN11G3048 Fragaria x ananassa HOM05D001434 ORTHO05D004586 3.4e-51 205.7 243 48.1
TPR.G1225 Trifolium pratense HOM05D001434 ORTHO05D004586 3.4e-51 205.7 262 48.5
Ca_06331_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 4.5e-51 205.3 255 49.4
Ca_30702_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 4.5e-51 205.3 255 49.4
TWI39G0476 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 4.5e-51 205.3 258 48.4
CANSAT11G2014 Cannabis sativa HOM05D001434 ORTHO05D004586 7.7e-51 204.5 259 49.0
Eucgr.F00743 Eucalyptus grandis HOM05D001434 ORTHO05D004586 7.7e-51 204.5 253 47.0
Phvul.008G269100 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 7.7e-51 204.5 258 48.1
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 1.0e-50 204.1 260 48.8
CANSAT11G2500 Cannabis sativa HOM05D001434 ORTHO05D004586 1.3e-50 203.8 255 48.6
MD03G1198400 Malus domestica HOM05D001434 ORTHO05D004586 2.9e-50 202.6 258 48.1
FAN21G1927 Fragaria x ananassa HOM05D001434 ORTHO05D004586 3.8e-50 202.2 259 45.9
RcHm_v2.0_Chr5g0040501 Rosa chinensis HOM05D001434 ORTHO05D004586 3.8e-50 202.2 262 46.2
FAN25G2755 Fragaria x ananassa HOM05D001434 ORTHO05D004586 6.5e-50 201.4 239 49.0
Atru.chr2.3467 Acer truncatum HOM05D001434 ORTHO05D004586 8.5e-50 201.1 257 49.4
Atru.chr2.3480 Acer truncatum HOM05D001434 ORTHO05D004586 8.5e-50 201.1 257 49.4
Medtr5g093230 Medicago truncatula HOM05D001434 ORTHO05D004586 8.5e-50 201.1 255 48.2
Gorai.002G090300 Gossypium raimondii HOM05D001434 ORTHO05D004586 1.1e-49 200.7 255 47.1
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 1.4e-49 200.3 258 44.6
FAN16G0031 Fragaria x ananassa HOM05D001434 ORTHO05D004586 2.5e-49 199.5 243 47.7
Gohir.D01G068300 Gossypium hirsutum HOM05D001434 ORTHO05D004586 3.2e-49 199.1 255 46.7
Medtr3g052790 Medicago truncatula HOM05D001434 ORTHO05D004586 4.2e-49 198.7 259 46.7
Lalb_Chr15g0081441 Lupinus albus HOM05D001434 ORTHO05D004586 5.5e-49 198.4 256 48.0
CSS0024501 Camellia sinensis var. sinensis HOM05D001434 ORTHO05D004586 7.2e-49 198.0 257 46.3
MD11G1214500 Malus domestica HOM05D001434 ORTHO05D004586 9.4e-49 197.6 251 48.2
Prupe.4G216600 Prunus persica HOM05D001434 ORTHO05D004586 1.2e-48 197.2 256 47.3
Ciclev10007601m.g Citrus clementina HOM05D001434 ORTHO05D004586 1.6e-48 196.8 261 46.0
Glyma.14G022300 Glycine max HOM05D001434 ORTHO05D004586 2.1e-48 196.4 255 47.1
Glyma.02G292300 Glycine max HOM05D001434 ORTHO05D004586 1.0e-47 194.1 255 45.9
PGSC0003DMG400022311 Solanum tuberosum HOM05D001434 ORTHO05D004586 1.4e-47 193.7 261 46.7
Actinidia05085 Actinidia chinensis HOM05D001434 ORTHO05D004586 1.8e-47 193.4 258 48.8
EL10Ac4g07774 Beta vulgaris HOM05D001434 ORTHO05D004586 1.8e-47 193.4 258 45.0
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 2.3e-47 193.0 255 46.3
Nn1g07173 Nelumbo nucifera HOM05D001434 ORTHO05D004586 3.9e-47 192.2 261 46.0
Sopen07g032940 Solanum pennellii HOM05D001434 ORTHO05D004586 6.7e-47 191.4 261 46.7
Dinv40771 Davidia involucrata HOM05D001434 ORTHO05D004586 8.8e-47 191.0 260 46.9
Solyc07g064740.3 Solanum lycopersicum HOM05D001434 ORTHO05D004586 1.1e-46 190.7 261 46.0
Sc03g0008500 Simmondsia chinensis HOM05D001434 ORTHO05D004586 2.6e-46 189.5 258 45.0
arahy.Tifrunner.gnm1.ann1.09LR4A Arachis hypogaea HOM05D001434 ORTHO05D004586 5.7e-46 188.3 255 46.3
Glyma.08G319100 Glycine max HOM05D001434 ORTHO05D004586 7.4e-46 188.0 265 45.3
Lj6g0020939 Lotus japonicus HOM05D001434 ORTHO05D004586 7.4e-46 188.0 256 46.9
arahy.Tifrunner.gnm1.ann1.MF778S Arachis hypogaea HOM05D001434 ORTHO05D004586 9.7e-46 187.6 261 44.8
DCAR_016715 Daucus carota HOM05D001434 ORTHO05D004586 1.3e-45 187.2 260 45.0
arahy.Tifrunner.gnm1.ann1.0VB874 Arachis hypogaea HOM05D001434 ORTHO05D004586 2.2e-45 186.4 256 45.7
Psat5g174680 Pisum sativum HOM05D001434 ORTHO05D004586 2.8e-45 186.0 257 44.7
Nitab4.5_0000328g0030 Nicotiana tabacum HOM05D001434 ORTHO05D004586 3.7e-45 185.7 261 46.0
Nitab4.5_0002287g0060 Nicotiana tabacum HOM05D001434 ORTHO05D004586 3.7e-45 185.7 261 46.0
Peaxi162Scf00235g00421 Petunia axillaris HOM05D001434 ORTHO05D004586 3.7e-45 185.7 261 46.0
Glyma.18G094400 Glycine max HOM05D001434 ORTHO05D004586 4.8e-45 185.3 266 45.1
Nn1g03482 Nelumbo nucifera HOM05D001434 ORTHO05D004586 4.8e-45 185.3 257 46.3
arahy.Tifrunner.gnm1.ann1.QFUU5V Arachis hypogaea HOM05D001434 ORTHO05D004586 1.1e-44 184.1 261 44.4
Ah.04g166010 Amaranthus hybridus HOM05D001434 ORTHO05D004586 1.8e-44 183.3 255 42.4
Cc05_g13980 Coffea canephora HOM05D001434 ORTHO05D004586 1.8e-44 183.3 261 45.2
PSO541G5896 Papaver somniferum HOM05D001434 ORTHO05D004586 2.4e-44 183.0 263 44.5
CAN.G337.77 Capsicum annuum HOM05D001434 ORTHO05D004586 3.1e-44 182.6 246 47.2
Lj1A875G28 Lonicera japonica HOM05D001434 ORTHO05D004586 4.1e-44 182.2 260 44.6
Lalb_Chr17g0348531 Lupinus albus HOM05D001434 ORTHO05D004586 6.9e-44 181.4 250 46.0
MBI02_g25402_MAGBIO Magnolia biondii HOM05D001434 ORTHO05D004586 9.1e-44 181.0 260 44.2
AUR62015810 Chenopodium quinoa HOM05D001434 ORTHO05D004586 2.6e-43 179.5 258 43.0
Phvul.006G046200 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 2.6e-43 179.5 268 42.9
Hund23230 Selenicereus undatus HOM05D001434 ORTHO05D004586 7.7e-43 177.9 256 44.9
VMungo0540G0244 Vigna mungo HOM05D001434 ORTHO05D004586 1.7e-42 176.8 266 43.2
Psat0s3384g0040 Pisum sativum HOM05D001434 ORTHO05D004586 2.9e-42 176.0 226 47.3
vmacro02222 Vaccinium macrocarpon HOM05D001434 ORTHO05D004586 8.5e-42 174.5 281 42.0
Rhsim06G0219000 Rhododendron simsii HOM05D001434 ORTHO05D004586 1.9e-41 173.3 286 42.3
Ah.06g182830 Amaranthus hybridus HOM05D001434 ORTHO05D004586 4.2e-41 172.2 255 41.6
Migut.H01814 Erythranthe guttata HOM05D001434 ORTHO05D004586 5.5e-41 171.8 256 42.6
Lalb_Chr04g0248331 Lupinus albus HOM05D001434 ORTHO05D004586 9.4e-41 171.0 210 50.0
Sed0002781 Sechium edule HOM05D001434 ORTHO05D004586 9.4e-41 171.0 202 50.0
ECA246G3933 Erigeron canadensis HOM05D001434 ORTHO05D004586 1.2e-40 170.6 254 40.2
SGA_v2.0_scaffold8G04338 Striga asiatica HOM05D001434 ORTHO05D004586 1.0e-39 167.5 259 42.9
PGR031G3770 Punica granatum HOM05D001434 ORTHO05D004586 1.8e-39 166.8 265 42.3
Actinidia08340 Actinidia chinensis HOM05D001434 ORTHO05D004586 8.8e-39 164.5 242 46.3
ATR0794G053 Amborella trichopoda HOM05D001434 ORTHO05D004586 1.5e-38 163.7 258 41.9
Aqoxy1G03123 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 9.7e-38 161.0 236 44.5
MSTRG.12984 Avicennia marina HOM05D001434 ORTHO05D004586 9.7e-38 161.0 255 40.8
Lsat_1_v5_gn_5_2920 Lactuca sativa HOM05D001434 ORTHO05D004586 1.7e-37 160.2 260 39.6
AUR62020408 Chenopodium quinoa HOM05D001434 ORTHO05D004586 2.2e-37 159.8 243 42.8
CDE05G0747 Ceratophyllum demersum HOM05D001434 ORTHO05D004586 2.8e-37 159.5 251 42.6
HanXRQChr05g0159431 Helianthus annuus HOM05D001434 ORTHO05D004586 1.8e-36 156.8 259 38.2
PSO675G6219 Papaver somniferum HOM05D001434 ORTHO05D004586 3.1e-36 156.0 236 43.2
Lsat_1_v5_gn_7_110060 Lactuca sativa HOM05D001434 ORTHO05D004586 7.7e-35 151.4 255 39.2
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 7.7e-35 151.4 273 36.6
Oeu034037.1 Olea europaea HOM05D001434 ORTHO05D004586 1.0e-34 151.0 273 38.5
Os07g0511000 Oryza sativa ssp. japonica HOM05D001434 ORTHO05D004586 1.0e-34 151.0 261 39.8
Hund01976 Selenicereus undatus HOM05D001434 ORTHO05D004586 3.2e-33 146.0 195 45.6
HanXRQChr11g0336391 Helianthus annuus HOM05D001434 ORTHO05D004586 4.0e-31 139.0 253 37.5
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 3.3e-30 136.0 150 51.3
ECA236G1274 Erigeron canadensis HOM05D001434 ORTHO05D004586 1.1e-28 131.0 199 41.2
Sc16g0005900 Simmondsia chinensis HOM05D001434 ORTHO05D004586 5.3e-28 128.6 138 51.4
TPR.G33786 Trifolium pratense HOM05D001434 ORTHO05D004586 2.2e-26 123.2 126 53.2
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 8.5e-26 121.3 263 33.8
HPP92_012415 Vanilla planifolia HOM05D001434 ORTHO05D004586 9.4e-25 117.9 214 36.9
Pp3c23_10600 Physcomitrium patens HOM05D001434 ORTHO05D004586 3.6e-24 115.9 258 33.7
AagrBONN_evm.TU.Sc2ySwM_228.3056 Anthoceros agrestis HOM05D001434 ORTHO05D004586 8.0e-24 114.8 198 36.4
Pp3c24_7080 Physcomitrium patens HOM05D001434 ORTHO05D004586 1.4e-23 114.0 268 33.6
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 4.0e-23 112.5 175 39.4
Actinidia32254 Actinidia chinensis HOM05D001434 ORTHO05D004586 1.5e-22 110.5 111 55.0
Mapoly0021s0054 Marchantia polymorpha HOM05D001434 ORTHO05D004586 9.8e-22 107.8 265 32.5
Dinv22250 Davidia involucrata HOM05D001434 ORTHO05D004586 3.1e-20 102.8 97 55.7
Gohir.A01G081200 Gossypium hirsutum HOM05D001434 ORTHO05D004586 3.1e-20 102.8 90 57.8
LjContig00272g0017225 Lotus japonicus HOM05D001434 ORTHO05D004586 3.5e-19 99.4 104 51.9
Gohir.A04G013800 Gossypium hirsutum HOM05D001434 ORTHO05D004586 4.5e-19 99.0 88 56.8
CBR_g52387 Chara braunii HOM05D001434 ORTHO05D004586 3.2e-17 92.8 210 32.4
Aqoxy435s001 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 2.1e-16 90.1 96 53.1
TPR.G39743 Trifolium pratense HOM05D001434 ORTHO05D004586 1.7e-13 80.5 156 37.2
PRCOL_00007277 Prasinoderma coloniale HOM05D001434 ORTHO05D004586 3.5e-11 72.8 112 38.4
Medtr3g039910 Medicago truncatula HOM05D001434 ORTHO05D004586 1.7e-10 70.5 210 30.0
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 8.0e-08 61.6 222 30.2
Actinidia32255 Actinidia chinensis HOM05D001434 ORTHO05D004586 1.0e-07 61.2 89 44.9
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 3.0e-07 59.7 100 37.0
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 6.8e-07 58.5 116 33.6
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 6.8e-07 58.5 167 30.5
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.5e-06 57.4 107 32.7
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 2.0e-06 57.0 109 33.9
FAN25G2752 Fragaria x ananassa HOM05D001434 ORTHO05D004586 2.0e-06 57.0 27 88.9
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.0e-06 57.0 113 31.9
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 2.0e-06 57.0 113 31.9
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 3.4e-06 56.2 116 31.9
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 3.4e-06 56.2 103 34.0
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 4.4e-06 55.8 103 35.0
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 4.4e-06 55.8 111 33.3
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 4.4e-06 55.8 112 31.2
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 4.4e-06 55.8 116 32.8
SEGI_27580 Sequoiadendron giganteum HOM05D001434 ORTHO05D004586 4.4e-06 55.8 27 88.9
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 4.4e-06 55.8 116 32.8
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 5.7e-06 55.5 113 31.9
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 5.7e-06 55.5 108 34.3
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.7e-06 55.5 115 31.3
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 5.7e-06 55.5 103 35.0
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.5e-06 55.1 101 34.7
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.5e-06 55.1 112 31.2
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 7.5e-06 55.1 112 31.2
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 7.5e-06 55.1 114 32.5
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 7.5e-06 55.1 186 27.4
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 9.8e-06 54.7 110 33.6
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 9.8e-06 54.7 112 33.0


User provided reference genes

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