Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 4.8e-48 194.1 95 100.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 1.9e-36 155.6 78 98.7
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 7.2e-36 153.7 77 97.4
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 2.7e-35 151.8 78 96.2
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 2.7e-35 151.8 78 96.2
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 9.7e-33 143.3 78 93.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 1.3e-32 142.9 83 90.4
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 1.3e-32 142.9 96 77.1
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 2.2e-32 142.1 83 90.4
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.1e-31 139.8 78 91.0
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.1e-31 139.8 78 91.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 1.8e-31 139.0 77 88.3
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.2e-30 136.3 78 88.5
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.2e-30 136.3 78 88.5
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.0e-29 133.3 78 87.2
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 8.5e-29 130.2 78 85.9
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 8.5e-29 130.2 78 85.9
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.1e-28 129.8 78 87.2
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.0e-26 121.7 67 89.6
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 6.7e-26 120.6 69 81.2
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 1.3e-24 116.3 67 77.6
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.7e-24 115.9 64 84.4
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.2e-24 115.5 64 82.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.2e-24 115.5 64 82.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.2e-24 115.5 64 82.8
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 2.2e-24 115.5 69 79.7
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 4.8e-24 114.4 66 83.3
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 4.8e-24 114.4 70 75.7
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 6.3e-24 114.0 64 81.2
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.3e-24 114.0 64 82.8
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 8.2e-24 113.6 64 84.4
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.1e-23 113.2 77 68.8
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 1.1e-23 113.2 65 78.5
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.1e-23 113.2 64 82.8
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.4e-23 112.8 70 77.1
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.4e-23 112.8 72 73.6
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.4e-23 112.8 64 82.8
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.4e-23 112.8 64 82.8
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.8e-23 112.5 71 77.5
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.8e-23 112.5 64 79.7
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.4e-23 112.1 62 82.3
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 2.4e-23 112.1 73 74.0
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.1e-23 111.7 70 75.7
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 3.1e-23 111.7 69 76.8
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 4.1e-23 111.3 64 81.2
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 5.3e-23 110.9 64 82.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.2e-22 109.8 64 79.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.2e-22 109.8 64 78.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.2e-22 109.8 64 79.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.6e-22 109.4 70 72.9
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 3.5e-22 108.2 61 77.0
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.5e-22 108.2 64 78.1
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 3.5e-22 108.2 74 70.3
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 3.5e-22 108.2 64 78.1
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.5e-22 108.2 65 78.5
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 7.7e-22 107.1 72 69.4
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 7.7e-22 107.1 60 76.7
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 7.7e-22 107.1 65 76.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 7.7e-22 107.1 70 74.3
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 7.7e-22 107.1 64 76.6
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 7.7e-22 107.1 59 84.7
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 7.7e-22 107.1 67 79.1
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 1.0e-21 106.7 67 71.6
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.0e-21 106.7 80 66.2
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-21 106.3 66 74.2
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.3e-21 106.3 66 74.2
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.3e-21 106.3 64 76.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.7e-21 105.9 72 68.1
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.9 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.9 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.9 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.9 72 66.7
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-21 105.9 60 75.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.7e-21 105.9 65 75.4
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.7e-21 105.9 60 75.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.2e-21 105.5 64 76.6
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 2.9e-21 105.1 64 76.6
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 2.9e-21 105.1 64 76.6
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.8e-21 104.8 68 70.6
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 3.8e-21 104.8 60 75.0
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 3.8e-21 104.8 64 73.4
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 5.0e-21 104.4 64 71.9
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 5.0e-21 104.4 65 75.4
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.1e-20 103.2 65 73.8
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.5e-20 102.1 64 73.4
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 2.5e-20 102.1 76 68.4
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 2.5e-20 102.1 64 73.4
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 3.2e-20 101.7 72 69.4
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 3.2e-20 101.7 72 69.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 3.2e-20 101.7 60 73.3
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.2e-20 101.7 64 73.4
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 4.2e-20 101.3 62 75.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 4.2e-20 101.3 69 68.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 4.2e-20 101.3 69 68.1
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 4.2e-20 101.3 65 70.8
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.1e-19 99.0 71 70.4
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 6.1e-19 97.4 67 67.2
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.0e-19 97.1 66 66.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 8.0e-19 97.1 66 66.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 8.0e-19 97.1 66 66.7
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 8.0e-19 97.1 83 59.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.3e-18 95.5 64 67.2
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 2.3e-18 95.5 56 80.4
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 4.0e-18 94.7 77 57.1
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 6.8e-18 94.0 61 70.5
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.5e-17 92.8 62 71.0
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 3.4e-17 91.7 50 82.0
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 3.4e-17 91.7 54 77.8
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 6.3e-16 87.4 64 62.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 1.8e-15 85.9 53 75.5
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 7.0e-07 57.4 46 58.7
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 2.0e-06 55.8 58 41.4


User provided reference genes

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