Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-53 212.6 110 100.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 3.4e-53 211.5 110 99.1
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.6e-50 202.6 110 94.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 3.5e-50 201.4 110 94.5
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 93.6
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 93.6
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 7.8e-50 200.3 110 93.6
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 2.9e-49 198.4 110 92.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 2.9e-49 198.4 110 92.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 6.6e-49 197.2 110 91.8
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 8.6e-49 196.8 110 91.8
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 8.6e-49 196.8 110 90.9
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.1e-48 196.4 110 90.9
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 92.8
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 92.8
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 92.8
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.9e-48 195.7 110 92.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.8e-46 189.1 110 89.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 5.8e-45 184.1 111 86.5
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.0e-41 171.0 99 84.8
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.5e-40 168.7 106 77.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 9.8e-37 156.8 101 74.3
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.7e-36 156.0 81 96.3
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 2.9e-36 155.2 108 69.4
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.7e-36 154.8 107 70.1
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 4.9e-36 154.5 100 76.0
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 6.4e-36 154.1 107 68.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 6.4e-36 154.1 103 81.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.3e-36 153.7 100 76.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 8.3e-36 153.7 107 69.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 8.3e-36 153.7 106 70.8
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 8.3e-36 153.7 107 71.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.1e-35 153.3 107 70.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.4e-35 152.9 112 67.9
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.9e-35 152.5 107 69.2
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.9e-35 152.5 107 68.2
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.9e-35 152.5 104 71.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.9e-35 152.5 107 69.2
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.4e-35 152.1 103 80.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 70.1
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.2e-35 151.8 107 69.2
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 69.2
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 4.1e-35 151.4 107 66.4
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 5.4e-35 151.0 108 70.4
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 7.0e-35 150.6 106 70.8
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 9.2e-35 150.2 110 68.2
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 9.2e-35 150.2 108 68.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 9.2e-35 150.2 106 67.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.2e-34 149.8 107 67.3
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.2e-34 149.8 109 67.0
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 66.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.6e-34 149.4 98 71.4
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.6e-34 149.4 101 68.3
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.1e-34 149.1 107 67.3
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.1e-34 149.1 107 67.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 2.1e-34 149.1 107 67.3
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 2.1e-34 149.1 106 68.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.7e-34 148.7 107 68.2
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 2.7e-34 148.7 110 64.5
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.7e-34 148.7 106 66.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.7e-34 148.7 107 68.2
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 3.5e-34 148.3 105 67.6
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.5e-34 148.3 107 65.4
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.5e-34 148.3 107 69.2
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 3.5e-34 148.3 98 74.5
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.6e-34 147.9 98 73.5
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 67.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 66.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 67.3
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 67.9
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 67.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 67.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 66.4
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 67.3
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 68.2
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 65.4
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 65.4
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 6.0e-34 147.5 110 67.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 66.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 6.0e-34 147.5 107 65.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 7.8e-34 147.1 107 65.4
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 67.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 102 68.6
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 66.4
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 65.4
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.0e-33 146.7 110 68.2
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.0e-33 146.7 101 67.3
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 64.2
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.7e-33 146.0 83 91.6
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 66.4
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.3e-33 145.6 102 66.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.3e-33 145.6 107 64.5
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.3e-33 145.6 106 67.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 2.3e-33 145.6 106 65.1
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 62.0
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 3.0e-33 145.2 110 69.1
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 106 66.0
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 65.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 5.0e-33 144.4 108 62.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.6e-33 144.1 110 64.5
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 8.6e-33 143.7 109 65.1
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 8.6e-33 143.7 106 67.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.5e-32 142.9 97 72.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.9e-32 142.5 102 68.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.9e-32 142.5 105 62.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 65.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 64.5
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.3e-32 141.7 106 62.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 4.3e-32 141.4 107 63.6
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 4.3e-32 141.4 106 64.2
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 4.3e-32 141.4 106 64.2
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.3e-32 141.4 109 65.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 4.3e-32 141.4 102 67.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.6e-32 141.0 106 64.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 7.3e-32 140.6 101 65.3
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 7.3e-32 140.6 105 62.9
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 106 63.2
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-31 139.8 106 63.2
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 1.2e-31 139.8 106 67.0
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.6e-31 139.4 106 66.0
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 2.8e-31 138.7 99 67.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.7e-31 137.9 104 65.4
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.2e-31 137.5 107 64.5
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.1e-30 136.7 103 67.0
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.4e-30 136.3 98 65.3
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.4e-30 136.3 100 66.0
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.4e-30 136.3 98 66.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 4.0e-30 134.8 98 65.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-29 133.3 107 58.9
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-29 133.3 107 58.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.5e-29 132.9 109 62.4
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.7e-28 129.4 95 66.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.4e-27 124.4 107 59.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 9.5e-24 113.6 98 59.2
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 4.7e-23 111.3 81 65.4
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.8e-22 109.4 90 61.1
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.4e-22 109.0 92 60.9
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.4e-21 104.8 92 58.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 3.8e-20 101.7 85 62.4
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.5e-18 95.1 66 65.2
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-18 94.7 107 48.6
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.0e-17 92.0 75 62.7
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.9e-17 91.7 85 57.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-14 82.8 65 58.5
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 4.0e-14 81.6 54 72.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 9.0e-14 80.5 51 70.6
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 6.4e-12 74.3 54 64.8
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.9e-11 72.8 53 66.0
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 5.4e-11 71.2 88 43.2
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.1e-10 69.3 54 61.1
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.8e-10 67.4 75 48.0
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.3e-09 66.6 85 43.5
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 3.0e-09 65.5 107 38.3
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 9.6e-08 60.5 44 65.9


User provided reference genes

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