Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 6.3e-117 424.1 209 100.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 6.3e-117 424.1 209 100.0
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 6.1e-112 407.5 209 95.7
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.1e-110 403.3 209 94.7
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 7.0e-108 394.0 206 93.2
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 7.0e-108 394.0 206 93.2
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 7.0e-108 394.0 209 90.9
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.2e-107 393.3 209 91.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.5e-107 392.9 209 90.9
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.0e-106 390.2 209 90.4
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.5e-106 387.5 206 91.3
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.5e-106 387.5 206 91.3
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.5e-106 387.5 206 91.3
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 6.5e-106 387.5 206 91.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 2.5e-105 385.6 206 90.8
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.5e-105 385.6 206 90.8
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 3.2e-105 385.2 209 89.5
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-105 385.2 206 90.3
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.2e-105 385.2 209 89.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-104 383.3 206 90.3
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.6e-104 381.7 209 88.5
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.3e-101 370.9 219 81.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 7.7e-99 364.0 209 84.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.8e-87 326.2 206 74.8
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 4.0e-87 325.1 203 74.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 5.2e-87 324.7 202 74.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.2e-86 323.6 202 74.3
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.2e-86 323.6 203 74.9
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-86 323.2 202 74.3
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 9.8e-86 320.5 197 74.6
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 9.8e-86 320.5 202 74.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 4.8e-85 318.2 202 74.8
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.2e-83 313.5 203 71.9
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.7e-83 312.4 204 72.1
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.5e-83 311.6 204 71.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 7.7e-83 310.8 193 75.1
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.0e-82 310.5 204 71.1
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.6e-82 307.8 201 70.1
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.1e-81 307.0 203 71.9
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-81 306.6 203 70.9
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.5e-81 306.6 206 70.9
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.5e-81 306.6 206 73.8
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 70.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 3.3e-81 305.4 205 70.2
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 4.2e-81 305.1 206 73.3
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 69.0
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.5e-81 304.7 204 69.6
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 7.2e-81 304.3 204 68.6
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 9.5e-81 303.9 203 69.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.2e-80 303.5 202 69.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.2e-80 303.5 202 69.3
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.6e-80 303.1 206 68.9
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 69.6
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.8e-80 302.4 203 70.0
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.8e-80 302.4 202 68.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-80 302.0 205 68.8
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-80 302.0 205 68.8
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 6.1e-80 301.2 224 65.2
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 69.6
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.0e-79 300.4 203 70.4
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.4e-79 300.1 204 68.6
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 68.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 2.3e-79 299.3 206 67.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 69.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.0e-79 298.9 203 69.5
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 5.2e-79 298.1 204 68.1
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.8e-79 297.7 204 70.6
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 6.8e-79 297.7 203 69.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.2e-78 297.0 202 68.3
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 69.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.5e-78 296.6 205 67.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 2.6e-78 295.8 202 67.8
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.4e-78 295.4 200 68.0
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.4e-78 295.4 204 69.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 4.4e-78 295.0 203 70.4
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.7e-78 294.7 203 68.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 5.7e-78 294.7 206 68.0
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.2e-77 292.7 203 68.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.2e-77 292.7 205 69.3
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.8e-77 292.4 204 68.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.9e-77 291.6 204 67.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.3e-77 290.8 203 66.0
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 8.3e-77 290.8 203 68.5
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.1e-76 290.4 202 67.3
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.1e-76 290.4 204 67.6
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 3.1e-76 288.9 202 66.8
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-76 288.5 203 68.5
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 5.4e-76 288.1 203 68.0
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.0e-75 286.2 201 67.7
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.7e-75 285.8 259 57.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.7e-75 285.8 203 64.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 4.5e-75 285.0 205 67.8
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.3e-74 283.5 199 67.3
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.3e-74 282.7 204 64.7
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.9e-74 282.3 204 68.1
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.1e-73 280.4 204 66.2
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.5e-73 280.0 203 64.0
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.5e-73 280.0 204 64.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 3.3e-73 278.9 206 67.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 5.6e-73 278.1 210 64.3
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.2e-72 276.9 193 65.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.6e-72 276.6 203 67.5
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.6e-72 275.4 203 66.0
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 8.0e-72 274.2 205 66.3
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 204 65.2
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 3.1e-71 272.3 203 64.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-70 270.0 203 62.1
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 7.5e-70 267.7 201 61.7
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.2e-69 266.2 206 63.6
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 4.9e-69 265.0 205 59.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.9e-68 263.1 203 63.1
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.4e-68 262.7 204 61.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.2e-68 262.3 203 62.6
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 7.0e-68 261.2 203 62.6
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 5.6e-65 251.5 204 56.9
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.8e-64 249.2 199 55.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 2.8e-64 249.2 206 60.2
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.2e-62 243.8 194 60.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 8.3e-61 237.7 208 53.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.3e-58 230.3 154 72.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.2e-55 218.4 212 51.4
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 5.8e-54 214.9 203 52.7
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 7.5e-54 214.5 212 50.9
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.9e-53 211.8 203 54.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 9.2e-52 207.6 145 68.3
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.1e-51 206.5 138 71.0
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.8e-51 204.5 140 72.9
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.0e-46 189.9 143 66.4
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.9e-46 187.6 152 63.8
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.6e-43 180.3 200 47.5
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.3e-41 172.6 126 67.5
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.1e-40 169.9 135 59.3
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.1e-35 153.3 184 46.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 9.3e-28 127.9 199 39.7
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.1e-27 126.7 195 35.4
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.5e-25 120.6 99 57.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 4.8e-24 115.5 129 45.0
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 4.5e-22 109.0 203 36.0
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.1e-20 101.7 77 58.4
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 9.3e-20 101.3 69 68.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.2e-19 100.9 66 65.2
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.6e-19 99.0 52 84.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-18 97.4 137 39.4
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.9e-18 95.9 66 69.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-17 93.2 67 65.7
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 3.5e-11 72.8 42 76.2
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 3.9e-10 69.3 70 58.6
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.3e-09 65.9 48 60.4
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.3e-09 65.9 48 60.4
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.3e-08 64.3 118 31.4
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 3.1e-07 59.7 38 84.2
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.2e-06 57.8 36 69.4
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.0e-06 57.0 42 50.0
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 4.5e-06 55.8 81 37.0


User provided reference genes

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