Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 0.0e+00 1613.6 804 100.0
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 0.0e+00 1536.5 807 96.3
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 0.0e+00 1429.5 819 90.1
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 0.0e+00 1200.3 839 74.9
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 0.0e+00 1156.0 840 72.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 0.0e+00 1146.7 836 71.4
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 0.0e+00 1146.7 836 71.4
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 0.0e+00 1096.3 839 69.0
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 0.0e+00 1096.3 839 68.8
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 0.0e+00 1095.1 840 68.1
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 0.0e+00 1092.4 839 68.8
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 0.0e+00 1082.4 840 67.3
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.1e-311 1073.2 840 67.1
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 1.4e-305 1052.7 839 65.9
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 4.3e-299 1031.2 839 65.4
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.3e-290 1003.0 840 62.5
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 5.3e-289 997.7 841 62.2
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.4e-288 995.0 841 62.1
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 4.5e-288 994.6 841 61.6
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 4.5e-288 994.6 841 62.1
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.5e-286 988.8 842 61.2
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 4.6e-285 984.6 841 61.0
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 7.9e-285 983.8 840 61.0
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 3.9e-284 981.5 841 60.9
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 1.1e-281 973.4 839 60.5
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 6.1e-277 957.6 841 60.6
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 7.9e-277 957.2 837 60.2
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 7.9e-277 957.2 837 60.1
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 7.9e-277 957.2 840 59.9
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 8.8e-276 953.7 840 59.9
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 1.5e-275 953.0 839 59.6
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 7.4e-275 950.7 841 59.7
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 9.7e-275 950.3 840 59.5
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 9.7e-275 950.3 840 59.5
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.3e-274 949.9 840 59.5
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 1.3e-274 949.9 840 60.5
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.7e-274 949.5 839 59.5
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 2.8e-274 948.7 695 72.2
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 4.8e-274 948.0 840 60.1
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 8.2e-274 947.2 840 59.4
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 2.4e-273 945.7 838 59.2
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.1e-273 945.3 837 58.9
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.1e-273 945.3 840 59.4
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 5.3e-273 944.5 840 59.6
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 9.1e-273 943.7 840 59.6
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 9.1e-273 943.7 840 58.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.2e-272 943.3 840 60.0
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 1.3e-271 939.9 840 59.5
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 1.7e-271 939.5 837 59.9
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.7e-271 939.5 840 58.2
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 2.2e-271 939.1 840 59.3
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.2e-271 939.1 841 59.2
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 2.2e-271 939.1 837 59.3
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 3.8e-271 938.3 840 59.6
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 6.5e-271 937.6 840 58.6
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.4e-270 936.4 835 58.6
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 3.2e-270 935.3 847 59.4
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 2.1e-269 932.6 837 58.9
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.7e-269 932.2 840 58.6
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 7.9e-269 930.6 840 58.6
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 7.9e-269 930.6 841 58.9
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 1.0e-268 930.2 838 58.8
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-268 929.9 838 58.7
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 1.4e-268 929.9 837 58.7
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.3e-268 929.1 838 58.8
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.3e-268 929.1 838 58.7
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.9e-268 928.3 838 58.6
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 6.7e-268 927.5 842 58.8
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 8.8e-268 927.2 838 58.6
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.1e-267 926.8 834 61.3
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 1.5e-267 926.4 842 58.3
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 3.3e-267 925.2 830 58.9
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.4e-267 924.9 838 58.5
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 1.4e-265 919.8 839 57.2
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.4e-265 919.8 837 58.1
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 5.7e-259 897.9 841 56.0
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 2.2e-258 896.0 842 58.4
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.4e-257 892.5 762 62.6
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 3.1e-257 892.1 840 55.0
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 3.1e-257 892.1 841 56.2
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.6e-256 889.8 840 57.1
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 2.0e-256 889.4 841 56.5
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.0e-255 887.1 841 56.5
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.0e-255 887.1 841 56.4
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 6.5e-255 884.4 841 56.0
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.1e-254 883.6 841 55.9
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 9.4e-254 880.6 841 56.0
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 2.1e-253 879.4 841 55.8
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 4.7e-253 878.2 841 55.6
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 6.1e-253 877.9 841 55.4
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 1.0e-252 877.1 841 55.6
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 1.4e-252 876.7 841 56.6
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.3e-252 875.9 839 55.7
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.0e-244 850.5 844 54.6
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 3.0e-244 849.0 913 51.6
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.5e-243 846.7 846 54.3
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 2.0e-243 846.3 885 53.9
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 2.4e-241 839.3 837 52.8
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 7.0e-241 837.8 839 53.6
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 5.0e-239 831.6 808 56.1
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.5e-238 830.1 749 59.3
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 2.8e-237 825.9 840 53.3
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.2e-235 820.5 841 52.9
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.0e-235 819.7 838 52.3
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.0e-235 819.7 838 52.3
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 3.7e-234 815.5 824 54.5
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 3.9e-231 805.4 839 52.1
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 2.8e-229 799.3 826 54.4
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 2.8e-229 799.3 842 51.7
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 6.1e-229 798.1 845 52.1
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 9.8e-227 790.8 830 51.1
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 3.2e-225 785.8 837 51.0
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 3.2e-225 785.8 836 49.6
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 8.6e-223 777.7 829 50.2
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 4.4e-219 765.4 831 50.2
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 7.5e-219 764.6 831 49.9
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.1e-214 750.7 837 49.0
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 2.3e-212 743.0 826 48.8
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 2.0e-211 740.0 729 56.1
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 2.1e-208 729.9 702 54.3
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 6.0e-208 728.4 837 49.0
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.8e-196 690.3 835 45.7
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 9.6e-190 667.9 838 44.4
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 2.1e-189 666.8 850 43.9
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 5.3e-188 662.1 829 45.2
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 1.1e-185 654.4 555 59.6
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 4.6e-184 649.0 850 42.8
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 3.1e-180 636.3 861 42.3
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 2.4e-164 583.6 641 49.0
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 2.8e-157 560.1 497 60.4
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 6.3e-157 558.9 602 52.8
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 3.3e-150 536.6 315 88.3
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.3e-150 536.6 543 55.6
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.5e-147 527.7 770 41.9
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.9e-145 520.8 810 39.5
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 9.4e-145 518.5 617 49.1
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.2e-144 518.1 849 37.1
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 1.0e-143 515.0 759 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 4.4e-142 509.6 575 48.9
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 2.2e-141 507.3 510 57.6
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 3.7e-133 479.9 575 47.0
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 4.5e-131 473.0 802 35.2
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 6.1e-128 462.6 327 76.1
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 1.0e-127 461.8 544 45.8
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 7.0e-124 449.1 812 33.9
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 4.0e-119 433.3 417 54.0
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 4.1e-116 423.3 348 63.2
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 5.9e-115 419.5 579 44.2
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 1.7e-114 417.9 321 64.5
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-109 400.2 524 45.8
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 4.1e-92 343.6 827 34.0
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.5e-81 308.5 820 27.6
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.0e-70 271.6 226 63.3
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 1.3e-66 258.8 252 56.0
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 6.2e-64 250.0 249 52.2
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 1.4e-60 238.8 202 58.4
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 2.1e-59 235.0 193 64.8
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 5.1e-58 230.3 354 41.2
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 1.1e-57 229.2 180 62.8
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 3.7e-48 197.6 244 47.5
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 1.8e-42 178.7 225 48.4
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 6.7e-42 176.8 204 48.5
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 8.5e-37 159.8 527 25.6
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.2e-32 145.2 115 60.9
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 9.1e-31 139.8 183 44.3
Prupe.2G190900 Prunus persica HOM05D003602 ORTHO05D004808 2.0e-30 138.7 237 37.1
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 4.5e-30 137.5 219 42.0
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 7.5e-25 120.2 104 54.8
Lsat_1_v5_gn_2_118340 Lactuca sativa HOM05D003602 ORTHO05D004808 9.7e-25 119.8 194 41.2
C02p25670 Brassica napus HOM05D003602 ORTHO05D018547 2.8e-24 118.2 194 36.6
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 3.8e-21 107.8 128 43.8
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.5e-20 105.9 131 46.6
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 1.5e-20 105.9 169 34.9
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 3.4e-17 94.7 99 49.5
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 1.4e-15 89.4 82 58.5
AL3G34240 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 5.4e-15 87.4 129 39.5
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 9.1e-15 86.7 103 44.7
BcaB05g21496 Brassica carinata HOM05D003602 ORTHO05D018547 2.5e-12 78.6 68 63.2
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 4.7e-11 74.3 66 56.1
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 9.8e-09 66.6 64 48.4
SEGI_28185 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 2.8e-08 65.1 65 49.2
Lsat_1_v5_gn_2_108301 Lactuca sativa HOM05D003602 ORTHO05D004808 4.9e-08 64.3 202 28.7
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 6.3e-08 63.9 247 27.9
Lsat_1_v5_gn_2_44960 Lactuca sativa HOM05D003602 ORTHO05D004808 4.1e-07 61.2 128 32.8


User provided reference genes

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