Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.4e-159 565.5 402 100.0
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 5.4e-125 451.8 374 90.6
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 9.5e-122 441.0 379 90.0
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 9.5e-122 441.0 379 90.0
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 9.5e-122 441.0 379 90.0
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 1.1e-106 391.0 382 74.9
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 4.6e-100 369.0 399 67.2
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 8.1e-97 358.2 402 64.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 1.1e-85 321.2 382 65.4
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 6.5e-78 295.4 390 61.0
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 2.3e-75 287.0 352 60.5
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 8.7e-75 285.0 352 60.2
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 2.8e-73 280.0 352 61.9
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 7.7e-71 271.9 343 67.9
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 7.4e-66 255.4 419 51.6
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 6.9e-64 248.8 340 61.5
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 6.1e-60 235.7 340 60.3
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 6.5e-54 215.7 390 56.7
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 3.7e-49 199.9 341 60.7
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.2e-42 178.3 390 41.5
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 5.7e-42 176.0 408 48.3
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 7.0e-40 169.1 123 73.2
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 9.1e-40 168.7 418 46.4
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.2e-39 168.3 416 46.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.0e-38 165.2 394 37.8
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.3e-38 164.9 394 37.1
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 1.3e-38 164.9 387 46.3
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.7e-38 164.5 394 37.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 7.2e-37 159.1 391 42.2
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.2e-36 158.3 423 36.4
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 2.8e-36 157.1 361 42.1
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 3.6e-36 156.8 124 67.7
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 1.0e-35 155.2 400 39.8
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.4e-35 154.8 116 69.0
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 1.8e-35 154.5 378 38.4
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 2.3e-35 154.1 122 68.9
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 3.0e-35 153.7 383 34.7
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 5.2e-35 152.9 471 34.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.3e-33 148.3 126 67.5
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 1.3e-33 148.3 133 63.9
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.7e-33 147.9 467 37.0
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 2.8e-33 147.1 123 66.7
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 2.8e-33 147.1 122 65.6
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 4.9e-33 146.4 368 37.8
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 4.9e-33 146.4 115 67.0
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 6.3e-33 146.0 355 34.1
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 8.3e-33 145.6 127 62.2
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 8.3e-33 145.6 126 63.5
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.8e-32 144.4 124 66.1
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.8e-32 144.4 103 74.8
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 2.4e-32 144.1 127 64.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.4e-32 144.1 127 65.4
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.4e-32 144.1 120 67.5
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 2.4e-32 144.1 408 35.5
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 3.1e-32 143.7 413 41.9
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 3.1e-32 143.7 129 60.5
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 3.1e-32 143.7 129 62.0
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 4.1e-32 143.3 120 65.8
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 4.1e-32 143.3 119 65.5
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.1e-32 143.3 97 70.1
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 4.1e-32 143.3 361 37.4
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 9.2e-32 142.1 131 64.1
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 9.2e-32 142.1 431 33.9
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.2e-31 141.7 402 41.0
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 1.2e-31 141.7 328 50.6
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.2e-31 141.7 356 41.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.6e-31 141.4 109 67.9
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.6e-31 141.4 484 31.8
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.6e-31 141.4 126 67.5
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 2.0e-31 141.0 124 64.5
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 2.0e-31 141.0 124 64.5
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 2.0e-31 141.0 124 64.5
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 3.5e-31 140.2 97 68.0
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 4.5e-31 139.8 131 61.1
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 5.9e-31 139.4 115 66.1
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 5.9e-31 139.4 91 73.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 7.8e-31 139.0 131 62.6
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 1.0e-30 138.7 127 62.2
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.3e-30 138.3 400 41.2
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.3e-30 138.3 416 34.4
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.3e-30 138.3 120 64.2
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.3e-30 137.5 488 36.1
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 2.9e-30 137.1 420 37.1
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 2.9e-30 137.1 425 34.8
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 2.9e-30 137.1 129 61.2
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 3.8e-30 136.7 483 28.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 3.8e-30 136.7 354 47.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 6.6e-30 136.0 444 33.6
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 6.6e-30 136.0 80 81.2
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.1e-29 135.2 398 37.2
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 1.5e-29 134.8 127 61.4
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.5e-29 134.8 133 59.4
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 2.5e-29 134.0 121 62.0
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 3.3e-29 133.7 116 63.8
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 4.3e-29 133.3 452 30.8
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 4.3e-29 133.3 101 69.3
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 4.3e-29 133.3 123 58.5
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 4.3e-29 133.3 120 60.0
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 5.6e-29 132.9 116 62.9
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 1.2e-28 131.7 101 68.3
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.6e-28 131.3 102 65.7
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.1e-28 131.0 89 74.2
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 3.6e-28 130.2 87 74.7
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 3.6e-28 130.2 443 34.1
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 3.6e-28 130.2 126 57.1
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 6.1e-28 129.4 131 56.5
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 3.0e-27 127.1 338 45.6
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 3.0e-27 127.1 412 41.5
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.4e-26 123.2 81 72.8
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.4e-26 123.2 81 72.8
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 7.5e-26 122.5 82 72.0
BcaC06g35790 Brassica carinata HOM05D018474 ORTHO05D006717 1.7e-25 121.3 281 43.8
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 3.7e-25 120.2 309 40.5
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 3.7e-25 120.2 179 45.3
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.9e-25 119.8 124 56.5
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 8.3e-25 119.0 329 56.2
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.4e-24 117.5 80 68.8
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 4.1e-24 116.7 126 51.6
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 3.9e-22 110.2 329 50.5
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.5e-21 107.5 562 28.1
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 9.5e-21 105.5 115 54.8
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.2e-20 105.1 133 53.4
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.1e-19 102.1 60 80.0
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-19 99.0 127 48.0
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 2.5e-13 80.9 88 54.5
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 4.3e-13 80.1 342 39.5
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 2.1e-12 77.8 52 71.2
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 6.2e-12 76.3 83 60.2
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 2.3e-11 74.3 338 29.6
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 3.1e-11 73.9 89 52.8
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 5.2e-11 73.2 45 71.1
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 5.2e-11 73.2 96 51.0
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 5.2e-11 73.2 120 40.8
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 4.4e-10 70.1 35 94.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 4.4e-10 70.1 35 94.3
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 5.4e-08 63.2 99 46.5
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 2.1e-07 61.2 84 45.2
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 6.0e-07 59.7 70 57.1
BcaC06g35789 Brassica carinata HOM05D018474 ORTHO05D006717 6.6e-06 56.2 39 76.9


User provided reference genes

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