Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.1e-173 611.7 302 100.0
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.2e-169 599.7 316 95.3
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 4.8e-158 561.2 308 90.9
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 7.6e-156 553.9 319 88.1
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.9e-154 549.3 319 87.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 9.0e-149 530.4 312 84.9
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 4.0e-141 505.0 321 78.5
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.0e-139 500.4 313 78.3
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 2.9e-139 498.8 310 79.4
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.9e-138 496.1 307 79.2
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 4.2e-138 495.0 322 77.3
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.1e-130 470.3 298 78.2
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.2e-126 456.1 318 71.1
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 7.7e-108 394.4 305 65.2
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.0e-107 394.0 307 64.5
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.2e-107 392.9 304 64.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 9.4e-106 387.5 315 62.9
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 9.4e-106 387.5 298 63.4
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.2e-105 387.1 294 63.3
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.1e-105 386.3 316 62.7
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 2.7e-105 386.0 309 63.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 8.0e-105 384.4 316 61.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.4e-104 383.6 315 62.2
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 1.8e-104 383.3 309 63.8
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 7.4e-103 377.9 314 60.2
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 7.4e-103 377.9 312 60.6
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 8.2e-102 374.4 311 61.4
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 3.1e-101 372.5 315 61.0
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 9.1e-101 370.9 316 59.8
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 2.0e-100 369.8 315 60.6
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 3.5e-100 369.0 319 59.6
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.0e-99 367.5 304 62.5
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 3.8e-99 365.5 315 59.7
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 8.5e-99 364.4 312 59.6
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.5e-98 363.6 301 60.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.9e-98 363.2 301 60.5
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 5.5e-98 361.7 305 60.0
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 9.4e-98 360.9 312 59.6
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.2e-97 360.5 324 59.3
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-97 360.5 318 57.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-97 360.5 318 57.2
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.2e-97 360.5 314 58.3
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.7e-97 358.6 304 64.5
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.7e-97 358.6 336 55.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.0e-96 357.5 313 58.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.8e-96 356.7 314 57.3
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.3e-96 356.3 310 58.4
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.0e-96 355.5 307 58.6
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 5.2e-96 355.1 357 54.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 3.4e-95 352.4 315 57.5
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.3e-94 350.5 364 53.0
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 4.8e-94 348.6 310 57.1
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 6.3e-94 348.2 315 55.6
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.1e-93 347.4 292 58.9
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.8e-93 346.7 306 59.5
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 3.5e-92 342.4 298 59.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 5.9e-92 341.7 310 54.8
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.3e-91 340.5 261 65.1
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.8e-91 339.0 295 57.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.5e-90 335.1 286 60.1
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 9.4e-90 334.3 302 56.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.7e-89 332.0 265 61.5
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 4.7e-89 332.0 362 50.6
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.4e-88 330.5 372 48.7
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.8e-88 330.1 365 51.0
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 2.3e-88 329.7 250 64.8
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.8e-88 327.8 269 60.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.2e-87 327.4 298 57.7
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.6e-87 326.2 368 51.1
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.6e-87 326.2 368 51.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 7.5e-87 324.7 341 53.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 7.5e-87 324.7 315 53.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.8e-87 324.3 266 60.2
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.7e-86 323.6 313 55.0
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.2e-86 323.2 299 55.9
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.4e-85 320.5 278 58.6
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.1e-85 318.9 311 54.0
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 9.1e-85 317.8 294 55.8
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 6.6e-83 311.6 315 54.3
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 6.6e-83 311.6 314 54.5
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.8e-81 306.2 296 55.1
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 4.7e-81 305.4 272 54.4
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 3.0e-80 302.8 330 50.0
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.2e-77 292.7 309 51.1
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.2e-77 292.7 309 51.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.0e-77 291.6 296 51.4
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.0e-76 290.0 328 47.0
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.1e-73 280.0 293 49.8
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.4e-72 277.3 232 59.5
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 5.2e-72 275.4 307 48.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 6.8e-72 275.0 290 49.0
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.5e-71 273.9 190 70.0
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.2e-70 270.0 213 61.5
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.1e-69 267.7 295 50.5
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.1e-69 267.7 194 69.1
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.4e-69 267.3 305 49.5
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.0e-68 261.9 324 45.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.1e-66 257.7 312 47.4
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.5e-66 257.3 241 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.9e-66 256.9 309 46.6
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.9e-66 256.9 228 58.8
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.9e-66 256.9 199 60.8
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 4.3e-66 255.8 239 56.1
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.6e-65 253.8 230 57.4
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.6e-65 252.7 219 58.4
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.4e-64 250.8 237 54.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 4.9e-62 242.3 220 57.3
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.1e-56 223.0 150 68.7
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 3.7e-54 216.1 181 59.7
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 5.4e-53 212.2 278 41.4
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 5.4e-53 212.2 308 42.9
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.3e-51 207.6 260 45.4
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.5e-50 203.4 141 67.4
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 8.9e-48 194.9 180 57.8
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.0e-43 181.4 131 69.5
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.5e-39 167.5 124 64.5
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.6e-39 166.8 181 50.8
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.1e-37 161.4 220 43.6
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.9e-34 150.6 159 50.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 7.4e-34 148.7 99 68.7
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.2e-30 137.1 140 53.6
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 6.2e-25 119.0 76 76.3
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.1e-24 118.2 88 65.9
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.8e-24 117.5 88 69.3
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 6.9e-24 115.5 164 42.1
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.2e-12 78.2 102 44.1
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.1e-11 72.8 66 51.5
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 8.7e-11 72.0 80 48.8
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.7e-09 66.6 85 50.6
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 9.0e-08 62.0 41 73.2
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 9.0e-08 62.0 90 40.0
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 71.4
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 71.4
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.0e-06 58.5 42 71.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 3.8e-06 56.6 57 50.9


User provided reference genes

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