Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.9e-96 355.1 171 100.0
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-84 316.6 152 100.0
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 9.8e-84 313.5 177 87.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 9.8e-84 313.5 156 96.8
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-83 313.2 179 85.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.8e-83 312.0 152 98.7
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.1e-82 310.1 152 98.0
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 3.1e-82 308.5 152 96.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 4.1e-82 308.1 152 96.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 4.1e-82 308.1 152 96.1
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 5.4e-82 307.8 152 96.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 5.4e-82 307.8 152 96.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.0e-81 305.8 152 94.7
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.0e-80 303.5 152 94.7
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.0e-80 303.5 152 94.1
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 5.5e-79 297.7 151 95.4
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.2e-76 290.0 152 88.8
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 9.2e-74 280.4 152 82.9
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.8e-69 266.2 152 78.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.8e-69 264.2 152 77.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.5e-68 263.1 152 77.0
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.5e-68 260.8 152 76.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 9.8e-68 260.4 152 77.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.7e-67 259.6 152 77.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.7e-67 258.5 152 77.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 8.3e-67 257.3 152 75.0
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.1e-66 256.9 148 77.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.1e-66 256.9 151 75.5
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.9e-66 256.1 152 75.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.2e-65 253.4 151 75.5
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.6e-65 253.1 152 73.7
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.0e-65 252.7 152 75.0
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 3.5e-65 251.9 152 74.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.6e-65 251.5 152 73.0
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 4.6e-65 251.5 152 75.7
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 7.8e-65 250.8 151 74.2
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.0e-64 250.4 152 74.3
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.0e-64 250.4 152 73.0
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.3e-64 250.0 151 73.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.3e-64 250.0 149 75.8
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.7e-64 249.6 152 73.7
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.7e-64 249.6 151 73.5
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.7e-64 249.6 148 75.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.3e-64 249.2 152 72.4
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.3e-64 249.2 152 72.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.0e-64 248.8 152 73.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 6.6e-64 247.7 152 73.7
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 6.6e-64 247.7 148 75.7
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 8.6e-64 247.3 152 72.4
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.9e-63 246.1 152 72.4
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.5e-63 245.7 152 71.7
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.3e-63 245.4 152 73.0
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 4.3e-63 245.0 152 72.4
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.2e-62 243.4 152 72.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-62 243.0 152 81.6
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.1e-62 242.7 152 72.4
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.1e-62 242.7 152 69.7
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.1e-62 242.7 152 70.4
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.8e-62 242.3 152 69.7
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.8e-62 242.3 152 71.7
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 3.6e-62 241.9 152 70.4
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 8.0e-62 240.7 151 70.9
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.8e-61 239.6 152 69.1
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 3.1e-61 238.8 152 69.7
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.0e-61 238.4 147 72.8
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.0e-61 238.4 147 72.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 6.8e-61 237.7 141 75.9
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.8e-61 237.7 157 67.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 8.9e-61 237.3 152 69.1
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.5e-60 236.5 141 75.2
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.5e-60 236.5 152 67.8
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.4e-60 235.3 147 68.7
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 5.8e-60 234.6 141 75.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.8e-60 234.6 142 71.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 7.5e-60 234.2 139 75.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 7.5e-60 234.2 152 69.1
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.3e-59 233.4 152 69.1
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.9e-59 232.3 144 72.2
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 8.3e-59 230.7 139 73.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.1e-58 230.3 143 73.4
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.4e-58 229.2 147 66.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 4.1e-58 228.4 146 67.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 4.1e-58 228.4 146 69.2
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 5.4e-58 228.0 143 69.2
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 5.4e-58 228.0 142 68.3
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 9.2e-58 227.3 144 68.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 9.2e-58 227.3 144 68.1
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 9.2e-58 227.3 143 69.2
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.1e-57 226.1 136 72.1
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 6.0e-57 224.6 148 68.2
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 6.0e-57 224.6 142 69.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.3e-56 223.4 143 68.5
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.3e-56 223.4 147 66.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-56 221.5 143 67.8
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-56 221.5 143 67.8
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 5.1e-56 221.5 143 67.8
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 8.6e-56 220.7 143 67.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.1e-55 220.3 144 66.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.1e-55 220.3 143 65.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.5e-55 219.9 153 63.4
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.5e-55 219.2 140 66.4
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.3e-55 218.8 149 63.1
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 9.5e-55 217.2 142 66.9
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.2e-54 216.9 142 66.2
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.2e-54 216.9 146 66.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 2.1e-54 216.1 144 66.7
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.6e-54 215.3 143 64.3
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 3.1e-53 212.2 146 61.6
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 8.9e-53 210.7 158 58.2
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 8.9e-53 210.7 152 63.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.4e-52 208.8 136 64.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 5.8e-52 208.0 142 64.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.7e-51 206.5 124 75.0
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 8.3e-51 204.1 152 58.6
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 5.4e-50 201.4 143 63.6
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.4e-45 186.8 109 78.9
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.4e-42 176.0 152 53.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.2e-42 175.3 123 65.9
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 9.3e-42 174.1 124 65.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 7.8e-41 171.0 152 52.0
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 4.3e-39 165.2 123 60.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 9.0e-37 157.5 149 53.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.5e-36 156.8 103 68.0
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.4e-36 155.6 152 54.6
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.3e-35 153.7 107 67.3
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.9e-35 151.8 123 56.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.6e-33 146.7 129 61.2
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.6e-33 146.7 153 49.0
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.1e-31 140.6 152 48.7
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 1.1e-31 140.6 153 47.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.5e-31 140.2 165 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 3.3e-31 139.0 165 49.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.4e-29 132.9 153 45.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.5e-28 130.2 155 45.8
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.7e-27 126.7 132 50.8
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.2e-27 126.3 90 63.3
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 9.6e-23 110.9 122 52.5
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 2.0e-20 103.2 63 77.8
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 7.6e-20 101.3 53 94.3
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.7e-17 92.8 67 65.7
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.3e-16 89.7 49 87.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.8e-13 80.1 46 84.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 7.1e-10 68.2 62 54.8
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.3e-08 63.9 66 43.9
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.8e-06 55.5 42 59.5


User provided reference genes

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