Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.5e-86 321.6 169 100.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-81 305.8 170 96.5
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-81 305.8 170 96.5
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.0e-81 305.8 170 96.5
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.3e-80 303.1 170 95.3
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-70 269.6 172 87.2
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.3e-69 265.8 177 87.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-62 243.4 176 81.2
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 2.3e-61 239.2 174 79.3
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.9e-61 238.4 174 79.3
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 8.8e-61 237.3 177 78.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 3.3e-60 235.3 177 77.4
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 5.7e-60 234.6 180 79.4
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.6e-57 225.7 177 76.8
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.9e-55 219.5 177 74.0
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.2e-55 218.4 175 77.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 6.5e-48 194.5 184 64.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 5.2e-45 184.9 174 67.2
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 9.8e-44 180.6 148 76.4
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.1e-42 177.2 157 72.6
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.8e-42 176.4 171 66.7
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-39 166.8 172 64.5
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 8.9e-37 157.5 185 56.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.6e-36 156.0 167 61.7
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.4e-36 155.6 130 74.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.7e-35 152.1 179 58.1
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-34 149.4 206 53.9
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-33 146.4 132 72.0
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 8.6e-32 141.0 179 58.7
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 8.0e-30 134.4 218 50.5
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.9e-27 125.2 186 49.5
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 8.3e-27 124.4 190 48.9
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.4e-26 123.6 180 48.3
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.9e-26 123.2 180 46.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.2e-26 122.5 185 46.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.2e-26 122.5 174 48.3
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.1e-26 122.1 165 49.1
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 4.1e-26 122.1 165 49.1
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 4.1e-26 122.1 177 49.7
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 9.2e-26 120.9 179 48.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.6e-25 120.2 187 47.6
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-25 120.2 186 46.2
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-25 120.2 186 46.2
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-25 120.2 186 46.2
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.0e-25 119.8 186 44.6
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.7e-25 119.4 190 46.8
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.6e-25 118.6 174 49.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 7.8e-25 117.9 180 46.7
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.8e-25 117.9 177 48.0
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 7.8e-25 117.9 187 47.6
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.0e-24 117.5 180 46.1
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.3e-24 117.1 181 47.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.7e-24 116.7 189 46.0
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 3.0e-24 115.9 185 47.6
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.9e-24 115.5 174 47.7
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 3.9e-24 115.5 186 47.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 5.0e-24 115.2 189 45.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 5.0e-24 115.2 187 46.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 6.6e-24 114.8 189 45.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 8.6e-24 114.4 176 47.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.5e-23 113.6 186 44.6
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.5e-23 113.6 185 45.4
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.9e-23 113.2 189 45.0
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 3.3e-23 112.5 185 44.9
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.3e-23 112.1 185 46.5
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 4.3e-23 112.1 188 43.1
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 4.3e-23 112.1 175 46.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.6e-23 111.7 188 44.7
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 9.5e-23 110.9 179 42.5
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.2e-22 110.5 151 51.0
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-22 110.2 93 72.0
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.6e-22 110.2 187 43.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.1e-22 109.8 176 45.5
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 2.8e-22 109.4 191 47.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.6e-22 109.0 181 43.1
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.6e-22 109.0 176 47.7
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.6e-22 109.0 185 44.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.7e-22 108.6 154 50.0
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 4.7e-22 108.6 183 44.8
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 8.0e-22 107.8 172 47.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 8.0e-22 107.8 186 44.1
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 8.0e-22 107.8 181 42.5
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.4e-21 107.1 169 46.2
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.4e-21 107.1 186 43.5
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 2.3e-21 106.3 181 47.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 3.1e-21 105.9 180 45.0
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 3.1e-21 105.9 187 44.4
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 3.1e-21 105.9 165 43.0
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 4.0e-21 105.5 178 43.8
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 5.2e-21 105.1 186 41.9
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 5.2e-21 105.1 179 46.4
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.2e-21 105.1 182 42.3
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 6.8e-21 104.8 104 59.6
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.2e-20 104.0 179 42.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.2e-20 104.0 154 48.7
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.0e-20 103.2 186 43.5
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.6e-20 102.8 177 43.5
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 3.4e-20 102.4 184 45.1
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 4.4e-20 102.1 182 43.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.4e-20 102.1 181 43.6
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 5.8e-20 101.7 181 43.1
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 5.8e-20 101.7 183 43.7
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 5.8e-20 101.7 183 43.7
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 5.8e-20 101.7 172 45.9
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.8e-20 100.9 187 43.3
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 9.8e-20 100.9 166 45.8
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 9.8e-20 100.9 182 43.4
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 9.8e-20 100.9 184 41.3
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.7e-19 100.1 185 44.3
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.9e-19 99.4 197 42.6
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 8.3e-19 97.8 183 43.2
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 7.0e-18 94.7 186 41.9
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 4.6e-17 92.0 99 57.6
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.8e-17 91.3 192 41.1
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 3.0e-16 89.4 181 40.3
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 6.6e-16 88.2 195 39.0
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 8.6e-16 87.8 75 64.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.9e-15 86.7 196 37.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 9.5e-15 84.3 188 38.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-14 83.6 205 39.5
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 6.2e-14 81.6 175 38.9
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.4e-13 80.5 195 35.9
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.4e-13 80.5 185 38.4
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 3.1e-13 79.3 82 52.4
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 8.9e-13 77.8 225 34.7
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.2e-12 77.4 175 37.7
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 9.9e-12 74.3 182 37.4
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.3e-11 73.9 148 40.5
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 3.2e-10 69.3 75 64.0
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 5.4e-10 68.6 188 36.7
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.2e-09 67.4 124 40.3
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.5e-09 65.9 180 32.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.3e-08 63.2 101 41.6
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.5e-07 59.7 91 41.8
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 2.1e-06 56.6 182 34.6
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.1e-06 56.6 182 34.6
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.1e-06 56.6 198 27.8
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.6e-06 55.8 140 34.3


User provided reference genes

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