Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.3e-129 466.5 242 100.0
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.6e-127 459.5 242 97.9
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-124 449.9 242 96.3
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.2e-124 449.9 242 96.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.8e-124 448.7 242 95.9
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 1.9e-112 409.5 239 89.1
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.3e-107 392.5 240 84.6
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 5.6e-101 371.3 240 80.0
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.2e-99 364.8 240 76.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.4e-98 362.1 236 77.1
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.8e-89 332.0 239 74.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.6e-86 321.2 233 70.8
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.3e-85 318.9 223 71.3
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.3e-85 318.9 237 68.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.6e-84 316.6 233 70.0
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 2.1e-84 316.2 233 70.0
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.8e-84 315.8 234 67.5
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 4.8e-84 315.1 233 69.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 4.8e-84 315.1 233 69.5
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.8e-84 315.1 233 69.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 8.1e-84 314.3 224 71.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 6.9e-83 311.2 237 66.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.0e-82 309.7 223 70.9
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.0e-82 309.7 223 70.9
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.6e-82 309.3 223 70.9
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.8e-82 308.1 223 70.4
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.8e-82 308.1 235 66.0
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.6e-82 307.8 235 66.0
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.4e-80 303.5 234 66.7
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.4e-80 303.5 234 65.0
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.9e-80 303.1 235 63.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.4e-80 302.8 236 65.3
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 4.2e-80 302.0 235 64.3
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 4.2e-80 302.0 235 63.4
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 63.4
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.2e-79 300.4 235 63.4
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.6e-79 300.1 235 64.7
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.5e-79 298.9 233 64.4
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.5e-79 298.9 230 63.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.6e-79 298.5 234 64.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 4.6e-79 298.5 233 63.9
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 6.0e-79 298.1 230 64.8
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.0e-78 297.4 233 63.9
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.0e-78 297.4 224 65.6
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.3e-78 297.0 235 62.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.3e-78 297.0 236 63.1
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.7e-78 296.6 224 65.6
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.7e-78 296.6 235 63.0
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 3.0e-78 295.8 234 63.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 5.1e-78 295.0 233 64.4
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 6.6e-78 294.7 234 62.0
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 8.7e-78 294.3 235 62.6
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.9e-77 293.1 259 58.3
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.3e-77 292.4 238 62.6
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 3.3e-77 292.4 233 63.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.3e-77 292.0 218 69.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 4.3e-77 292.0 234 62.0
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.6e-77 291.6 224 64.7
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.3e-77 291.2 230 63.5
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 7.3e-77 291.2 235 61.3
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 9.6e-77 290.8 234 62.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.3e-76 290.4 235 62.6
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.6e-76 290.0 235 61.7
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.1e-76 289.7 235 62.6
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.1e-76 289.7 235 63.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.8e-76 288.5 224 63.8
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.1e-75 287.3 235 62.6
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 1.8e-75 286.6 234 62.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.8e-75 286.6 235 60.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.4e-75 286.2 235 62.1
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 5.3e-75 285.0 271 55.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.3e-75 285.0 238 57.1
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 6.9e-75 284.6 233 60.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 9.0e-75 284.3 235 60.9
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.5e-74 283.5 236 62.7
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 9.9e-74 280.8 201 69.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.7e-73 280.0 204 68.1
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.2e-73 279.6 235 60.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 6.4e-73 278.1 235 60.9
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.4e-72 276.2 230 59.1
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 4.2e-72 275.4 224 62.9
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.2e-71 273.9 230 56.1
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.6e-71 273.5 276 53.3
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.7e-71 272.7 210 65.7
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.0e-70 270.8 201 66.2
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 6.7e-70 268.1 235 58.3
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.5e-69 266.2 209 63.2
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.3e-69 265.8 229 59.4
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.3e-69 265.8 235 56.6
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-69 265.8 214 62.6
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.3e-68 263.8 204 64.7
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.6e-68 263.5 237 59.5
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.6e-68 263.5 237 59.5
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 6.2e-68 261.5 234 59.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.2e-66 257.3 236 56.4
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.0e-66 256.5 235 54.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 7.6e-66 254.6 197 62.9
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 7.6e-66 254.6 187 65.8
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 6.5e-65 251.5 194 64.4
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.4e-64 250.4 204 62.7
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.2e-64 248.8 235 57.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 9.3e-64 247.7 227 54.6
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 9.3e-64 247.7 262 51.9
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.2e-63 247.3 204 59.8
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.6e-63 246.9 221 57.5
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.1e-63 246.5 235 51.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.5e-63 245.7 228 55.7
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.6e-63 245.4 230 56.5
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.7e-61 238.4 223 51.6
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.6e-60 236.9 227 49.8
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 3.1e-59 232.6 166 66.3
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 4.1e-59 232.3 189 63.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 9.0e-59 231.1 186 59.7
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.4e-58 229.2 229 50.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 4.5e-58 228.8 167 66.5
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.0e-57 225.3 135 84.4
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.5e-55 219.2 196 58.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.3e-54 217.2 151 74.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 8.7e-54 214.5 166 65.1
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 7.4e-53 211.5 217 49.3
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 4.1e-51 205.7 224 47.3
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.3e-51 205.3 233 49.4
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.2e-49 199.9 237 48.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.9e-48 196.8 204 52.9
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.5e-48 196.4 147 66.0
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.1e-47 193.4 151 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.8e-44 183.0 173 52.6
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-42 176.8 150 68.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.9e-41 172.9 126 67.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 7.9e-39 164.9 233 49.4
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.5e-34 149.4 234 40.6
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 7.7e-34 148.3 103 69.9
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.8e-33 146.0 104 71.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 3.8e-33 146.0 103 68.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.8e-30 137.1 112 62.5
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 6.7e-30 135.2 109 60.6
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.1e-29 134.4 102 62.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 5.9e-26 122.1 198 36.9
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 5.0e-25 119.0 263 33.8
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 7.2e-24 115.2 215 32.1
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 8.8e-22 108.2 231 32.5
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 8.8e-22 108.2 231 32.5
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 5.7e-21 105.5 87 58.6
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 8.5e-17 91.7 54 79.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 5.5e-16 89.0 94 56.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.7e-15 85.9 203 32.0
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.2e-12 77.0 51 70.6
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 4.9e-12 75.9 49 71.4
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 6.3e-12 75.5 71 47.9
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 8.3e-12 75.1 51 70.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.4e-11 73.6 79 46.8
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 4.1e-11 72.8 68 58.8
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 2.0e-10 70.5 50 72.0
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.1e-08 64.7 53 58.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 7.3e-08 62.0 48 56.2


User provided reference genes

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