Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 0.0e+00 1284.2 674 100.0
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 0.0e+00 1255.4 674 97.8
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 0.0e+00 1255.4 674 97.8
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 0.0e+00 1170.2 678 92.5
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 3.7e-296 1021.1 682 82.1
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.0e-269 931.8 684 76.8
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.1e-268 929.9 684 76.5
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 4.3e-268 927.9 690 76.2
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.3e-264 916.4 687 75.4
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 9.3e-263 910.2 687 75.0
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 3.5e-262 908.3 687 74.2
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.1e-259 899.0 698 72.9
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 3.4e-233 812.0 559 77.8
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 5.2e-229 798.1 716 65.9
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 5.7e-228 794.7 717 64.7
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.4e-226 790.0 713 64.7
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.3e-187 660.6 732 55.7
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.1e-146 524.6 475 65.9
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 7.9e-145 518.5 701 48.5
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.4e-128 464.5 315 75.6
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 4.2e-114 416.4 539 47.7
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 7.2e-114 415.6 371 58.8
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.3e-112 410.6 676 41.3
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.0e-112 410.2 651 42.5
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.1e-111 408.3 359 58.5
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.7e-110 404.4 713 41.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.7e-110 404.4 370 61.9
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 3.7e-110 403.3 735 38.8
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.4e-109 400.6 648 42.6
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 5.3e-109 399.4 362 57.5
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.2e-108 398.3 630 41.4
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.2e-108 398.3 651 40.7
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 5.0e-107 392.9 388 54.1
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 5.0e-107 392.9 596 41.1
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 8.5e-107 392.1 399 53.4
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.5e-106 391.3 360 56.9
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.5e-106 390.6 348 58.6
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 7.2e-106 389.0 397 53.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 9.4e-106 388.7 368 55.7
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 2.7e-105 387.1 341 59.2
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 3.6e-105 386.7 405 53.8
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 3.6e-105 386.7 405 53.8
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 4.7e-105 386.3 350 56.9
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.4e-104 384.8 396 51.5
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.4e-104 384.8 368 55.2
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.8e-104 384.4 351 57.0
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.8e-104 384.4 406 50.7
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.8e-104 382.5 396 51.8
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.5e-103 381.3 692 39.3
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.5e-103 381.3 411 52.1
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.5e-103 381.3 466 47.4
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 2.0e-103 380.9 698 38.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.0e-103 380.9 704 39.5
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 2.6e-103 380.6 350 57.1
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 2.6e-103 380.6 567 42.2
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 9.7e-103 378.6 360 55.3
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.3e-102 378.3 544 44.7
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 4.8e-102 376.3 353 55.8
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 7.0e-101 372.5 374 54.8
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.5e-100 370.2 708 37.9
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.3e-99 368.2 360 54.7
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 2.2e-99 367.5 405 49.6
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 8.5e-99 365.5 522 42.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.1e-98 365.2 752 36.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 7.2e-98 362.5 360 53.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 7.2e-98 362.5 330 57.0
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.6e-97 361.3 350 53.7
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.6e-97 361.3 365 54.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.6e-97 361.3 368 52.2
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 2.1e-97 360.9 538 43.3
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.6e-97 360.1 610 39.7
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 6.1e-97 359.4 347 53.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 1.4e-96 358.2 368 51.9
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.4e-96 358.2 616 38.1
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 3.0e-96 357.1 411 49.9
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 3.0e-96 357.1 695 37.3
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 3.0e-96 357.1 349 52.7
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 4.0e-96 356.7 368 50.5
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.3e-94 351.7 534 41.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.2e-94 350.9 517 42.2
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 3.7e-94 350.1 691 37.2
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 6.3e-94 349.4 347 51.9
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 8.3e-94 349.0 405 47.7
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 1.1e-93 348.6 621 39.8
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.4e-93 348.2 406 48.0
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.4e-93 347.4 449 46.1
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.1e-93 347.1 710 37.7
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.1e-93 347.1 449 46.1
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.6e-92 344.7 344 52.0
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.6e-92 344.7 400 46.5
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 2.0e-92 344.4 387 49.9
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 5.9e-92 342.8 639 36.8
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.3e-91 340.9 406 47.3
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 8.6e-91 339.0 653 37.5
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 5.5e-90 336.3 494 42.9
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 7.2e-90 335.9 650 38.3
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.0e-88 332.0 703 36.0
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 5.7e-87 326.2 413 45.0
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 7.5e-87 325.9 498 41.2
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.7e-86 324.7 498 41.2
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 8.3e-86 322.4 351 51.3
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 3.5e-84 317.0 566 38.2
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.5e-82 310.8 698 34.2
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.7e-81 306.6 356 46.6
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.3e-80 304.3 540 36.7
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 3.1e-80 303.9 681 33.6
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.9e-77 294.7 683 34.6
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.4e-72 278.5 239 60.3
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.2e-62 244.6 250 52.0
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 2.9e-62 244.2 208 60.6
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.1e-61 242.3 308 42.9
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.1e-56 224.2 396 34.6
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 3.1e-56 224.2 211 55.5
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.4e-53 215.3 235 45.1
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.3e-51 208.8 314 40.8
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 2.0e-47 194.9 327 37.9
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.1e-42 179.1 500 32.8
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.5e-31 142.1 113 58.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 4.9e-30 137.1 432 28.2
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 9.3e-29 132.9 117 55.6
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 6.0e-28 130.2 154 46.8
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 2.5e-26 124.8 147 46.3
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.4e-21 109.0 248 28.2
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 2.7e-20 104.8 126 42.9
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.0e-19 102.8 121 43.8
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 2.5e-18 98.2 438 26.7
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 9.7e-18 96.3 85 55.3
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 2.2e-14 85.1 181 29.8
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.5e-13 80.5 76 47.4
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 9.4e-13 79.7 62 61.3
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.2e-12 79.3 72 52.8
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.5e-10 71.6 56 60.7
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.5e-10 71.6 56 60.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.2e-07 62.8 55 60.0


User provided reference genes

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