Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.0e-236 822.0 403 100.0
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.0e-236 822.0 403 100.0
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 3.0e-232 808.1 403 98.8
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 4.4e-228 794.3 405 96.5
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.4e-220 768.1 407 93.1
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 4.2e-210 734.6 407 88.7
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 6.7e-208 727.2 406 87.4
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 1.9e-207 725.7 406 87.2
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.5e-204 716.1 405 86.4
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 8.5e-203 710.3 404 85.4
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 5.5e-202 707.6 405 84.9
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.1e-200 701.0 405 84.0
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 5.7e-199 697.6 391 86.2
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.1e-197 693.3 407 83.3
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.4e-197 692.2 391 85.7
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-194 683.3 395 85.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.1e-194 683.3 395 85.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.4e-186 656.4 405 80.0
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.1e-181 638.6 390 80.0
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 2.8e-174 615.5 406 75.1
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 9.1e-173 610.5 408 74.5
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.0e-172 609.4 408 74.3
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.7e-172 607.4 405 74.1
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 7.7e-172 607.4 409 74.8
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 2.9e-171 605.5 409 73.3
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.8e-171 605.1 386 75.4
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-170 603.6 405 73.3
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.5e-170 603.2 408 73.0
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.9e-170 602.8 411 73.5
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 3.2e-170 602.1 406 73.9
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.5e-170 601.3 408 73.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.2e-169 600.1 417 70.3
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.0e-168 597.0 407 74.0
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-168 596.7 407 72.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.0e-168 595.5 415 72.0
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 8.8e-168 594.0 405 72.1
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.2e-167 593.6 406 71.7
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.2e-167 593.6 407 72.5
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.5e-167 593.2 415 72.0
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.5e-167 593.2 406 72.2
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.6e-167 592.4 409 70.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.7e-167 591.3 415 71.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 3.7e-166 588.6 408 71.8
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 4.8e-166 588.2 407 72.5
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 5.4e-165 584.7 408 72.3
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 5.4e-165 584.7 408 71.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 9.1e-165 583.9 403 71.7
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.6e-164 583.2 407 71.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.7e-164 582.4 387 73.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 4.5e-164 581.6 407 70.5
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.3e-163 580.1 388 72.4
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.7e-163 579.7 406 69.5
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 6.5e-163 577.8 417 71.2
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 8.5e-163 577.4 407 69.5
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.9e-162 576.2 407 69.0
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.2e-162 575.5 409 69.9
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.2e-162 574.3 390 73.6
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 9.5e-162 573.9 406 70.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 9.5e-162 573.9 407 69.0
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.2e-161 573.5 409 68.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.2e-161 573.5 392 71.9
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.8e-161 572.4 406 70.9
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 3.6e-161 572.0 409 70.4
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 4.7e-161 571.6 389 73.5
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.4e-160 570.1 410 69.5
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.4e-160 570.1 406 71.2
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.0e-160 568.9 392 73.5
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 8.8e-160 567.4 400 69.8
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.0e-159 566.2 407 69.3
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.7e-158 563.1 406 69.2
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.7e-158 563.1 409 67.7
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.7e-158 563.1 383 71.0
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.8e-158 562.4 408 70.1
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 4.9e-158 561.6 405 69.9
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.9e-158 561.6 383 70.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.4e-157 560.1 404 68.1
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.4e-157 560.1 407 69.8
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.4e-157 559.3 395 68.6
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 4.1e-157 558.5 412 68.7
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.2e-156 557.0 382 72.5
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.2e-156 557.0 405 68.9
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 3.5e-156 555.4 390 70.0
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.3e-155 552.7 403 68.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 5.0e-155 551.6 406 69.0
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 5.0e-155 551.6 392 69.9
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 1.1e-154 550.4 390 69.5
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.5e-154 549.3 408 69.4
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 4.3e-154 548.5 406 67.0
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.1e-153 546.2 396 67.7
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 4.7e-153 545.0 408 66.9
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 6.1e-153 544.7 361 72.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 8.0e-153 544.3 409 68.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.0e-152 543.9 407 67.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.8e-152 543.1 401 66.8
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 6.8e-152 541.2 389 68.6
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 2.9e-150 535.8 411 67.6
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 3.7e-150 535.4 390 65.9
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.0e-147 527.3 389 67.6
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.0e-147 527.3 344 75.3
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.7e-147 526.6 418 64.8
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 2.3e-147 526.2 388 66.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.3e-146 522.3 459 62.3
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 2.1e-145 519.6 391 65.0
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 8.0e-145 517.7 384 65.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.3e-142 510.4 410 63.4
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.3e-142 510.4 396 63.4
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-142 510.4 408 63.7
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.2e-142 509.6 388 63.1
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 3.5e-140 502.3 382 64.4
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 4.6e-140 501.9 392 64.0
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 6.0e-140 501.5 383 64.0
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.9e-139 498.8 394 62.7
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 6.6e-139 498.0 384 62.8
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.5e-138 496.1 384 63.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 3.3e-138 495.7 385 63.9
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.6e-137 493.4 391 62.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.1e-137 493.0 388 62.4
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.8e-136 490.0 387 64.3
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 2.3e-136 489.6 310 76.1
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.2e-136 488.4 406 61.8
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 8.9e-136 487.6 411 62.0
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.2e-134 483.0 384 64.1
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.9e-134 482.6 398 61.8
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 7.8e-132 474.6 328 68.0
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.3e-131 473.0 424 59.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 5.1e-131 471.9 308 73.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.2e-125 451.1 384 59.9
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.6e-123 444.9 264 82.2
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.2e-119 434.1 392 56.4
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-108 396.4 250 75.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.5e-108 396.0 246 76.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-103 380.6 282 68.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 3.4e-103 379.4 278 68.7
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.6e-100 370.5 202 90.1
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 3.7e-97 359.4 412 49.3
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 6.5e-94 348.6 281 61.9
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.2e-89 333.6 408 47.1
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.2e-89 331.6 274 58.0
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.4e-88 330.9 387 46.3
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 9.0e-88 328.2 250 64.0
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 6.5e-86 322.0 234 67.5
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-76 291.2 172 81.4
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.4e-74 282.7 197 72.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 3.5e-63 246.5 176 68.2
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.7e-62 244.2 281 46.3
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 1.5e-50 204.5 181 58.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 5.7e-42 176.0 164 54.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.5e-42 175.6 166 55.4
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 7.5e-42 175.6 234 41.9
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 5.4e-40 169.5 119 70.6
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.0e-38 165.2 162 53.1
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 8.9e-35 152.1 82 85.4
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.2e-33 147.5 156 50.6
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.3e-30 137.5 305 31.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 9.5e-29 132.1 299 32.4
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 2.8e-28 130.6 251 37.1
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 5.2e-27 126.3 236 36.9
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.0e-26 124.4 76 75.0
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.7e-23 114.0 68 76.5
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 6.0e-23 112.8 159 42.8
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.8e-23 112.5 68 75.0
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-22 111.7 68 75.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.7e-22 111.3 321 30.2
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 4.7e-20 103.2 185 37.3
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 4.4e-18 96.7 141 37.6
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 7.5e-18 95.9 48 97.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.9e-17 94.0 101 45.5
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.9e-14 83.6 183 32.8
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 2.8e-12 77.4 111 41.4
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 8.1e-12 75.9 79 43.0
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.9e-10 68.9 38 78.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.4e-08 64.3 119 39.5
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 5.1e-06 56.6 181 30.4


User provided reference genes

Program Settings