Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p06000 Brassica napus HOM05D000038 ORTHO05D006899 3.5e-66 255.0 144 100.0
BNapus_Darmor_BZH_scaffold_38p01840 Brassica napus HOM05D000038 ORTHO05D006899 4.6e-50 201.4 111 100.0
BraA02t05552Z Brassica rapa HOM05D000038 ORTHO05D006899 4.6e-50 201.4 111 100.0
BcaC03g13729 Brassica carinata HOM05D001262 ORTHO05D006899 6.6e-49 197.6 111 97.3
BolC2t07010H Brassica oleracea HOM05D000038 ORTHO05D006899 6.6e-49 197.6 111 97.3
BcaB05g22877 Brassica carinata HOM05D000038 ORTHO05D006899 9.5e-48 193.7 111 93.7
AL6G31600 Arabidopsis lyrata HOM05D000038 ORTHO05D006899 1.1e-43 180.3 111 88.3
Thhalv10013470m.g Eutrema salsugineum HOM05D000038 ORTHO05D006899 1.1e-43 180.3 111 88.3
AT5G20050 Arabidopsis thaliana HOM05D000038 ORTHO05D006899 5.4e-43 177.9 111 86.5
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-42 176.8 111 85.6
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-42 176.8 111 85.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.2e-42 176.8 111 85.6
BcaB01g04813 Brassica carinata HOM05D001262 ORTHO05D001114 1.6e-42 176.4 111 84.7
BolC3t13611H Brassica oleracea HOM05D000038 ORTHO05D006899 1.6e-42 176.4 111 84.7
Carub.0006s1843 Capsella rubella HOM05D000038 ORTHO05D006899 4.6e-42 174.9 111 84.7
THA.LOC104815104 Tarenaya hassleriana HOM05D000038 ORTHO05D006899 5.6e-40 167.9 111 80.2
CARHR192780 Cardamine hirsuta HOM05D000038 ORTHO05D006899 1.2e-39 166.8 115 79.1
THA.LOC104799652 Tarenaya hassleriana HOM05D000038 ORTHO05D006899 2.2e-36 156.0 111 72.1
QL02p087463 Quercus lobata HOM05D000038 ORTHO05D006899 2.8e-31 139.0 111 65.8
Manes.06G053000 Manihot esculenta HOM05D000038 ORTHO05D006899 3.6e-31 138.7 111 65.8
Cc06_g08900 Coffea canephora HOM05D000038 ORTHO05D006899 8.1e-31 137.5 112 66.1
PGR142G0413 Punica granatum HOM05D000038 ORTHO05D006899 8.1e-31 137.5 111 60.4
GSVIVG01015489001 Vitis vinifera HOM05D000038 ORTHO05D006899 8.1e-31 137.5 111 64.9
Manes.14G129400 Manihot esculenta HOM05D000038 ORTHO05D006899 2.4e-30 136.0 111 65.8
Ciclev10008261m.g Citrus clementina HOM05D000038 ORTHO05D006899 6.8e-30 134.4 110 64.5
Atru.chr7.1232 Acer truncatum HOM05D000038 ORTHO05D006899 8.9e-30 134.0 111 62.2
Gohir.D06G056000 Gossypium hirsutum HOM05D000038 ORTHO05D006899 8.9e-30 134.0 111 66.7
CiPaw.04G169700 Carya illinoinensis HOM05D000038 ORTHO05D006899 1.2e-29 133.7 111 64.0
Gorai.001G002500 Gossypium raimondii HOM05D000038 ORTHO05D006899 1.2e-29 133.7 111 64.9
Gorai.010G065600 Gossypium raimondii HOM05D000038 ORTHO05D006899 1.5e-29 133.3 111 65.8
Lj4g0016941 Lotus japonicus HOM05D000038 ORTHO05D006899 1.5e-29 133.3 111 62.2
Ca_21705_v3 Cicer arietinum L. HOM05D000038 ORTHO05D006899 2.0e-29 132.9 111 64.0
Haze_25628 Corylus avellana HOM05D000038 ORTHO05D006899 2.0e-29 132.9 111 61.3
Gohir.A06G057700 Gossypium hirsutum HOM05D000038 ORTHO05D006899 2.0e-29 132.9 111 65.8
Eucgr.C01118 Eucalyptus grandis HOM05D000038 ORTHO05D006899 2.6e-29 132.5 111 62.2
Thecc.09G121200 Theobroma cacao HOM05D000038 ORTHO05D006899 2.6e-29 132.5 111 65.8
Cfa003335 Carpinus fangiana HOM05D001262 ORTHO05D001114 3.4e-29 132.1 111 62.2
Gohir.D07G002600 Gossypium hirsutum HOM05D000038 ORTHO05D006899 3.4e-29 132.1 111 64.0
DCAR_009209 Daucus carota HOM05D000038 ORTHO05D006899 4.4e-29 131.7 111 63.1
MD02G1037000 Malus domestica HOM05D000038 ORTHO05D006899 4.4e-29 131.7 111 61.3
CANSAT56G3859 Cannabis sativa HOM05D000038 ORTHO05D006899 5.8e-29 131.3 111 64.0
Lj1g0014820 Lotus japonicus HOM05D000038 ORTHO05D006899 5.8e-29 131.3 111 60.4
MD15G1177100 Malus domestica HOM05D000038 ORTHO05D006899 5.8e-29 131.3 111 63.1
Cpa.g.sc75.69 Carica papaya HOM05D000038 ORTHO05D006899 7.6e-29 131.0 111 64.9
TWI63G1744 Tripterygium wilfordii HOM05D000038 ORTHO05D006899 7.6e-29 131.0 111 60.4
FAN28G2515 Fragaria x ananassa HOM05D000038 ORTHO05D006899 1.3e-28 130.2 111 63.1
RcHm_v2.0_Chr2g0089251 Rosa chinensis HOM05D000038 ORTHO05D006899 1.3e-28 130.2 111 64.0
CSS0038471 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D006899 2.2e-28 129.4 111 62.2
Medtr4g113710 Medicago truncatula HOM05D000038 ORTHO05D006899 2.2e-28 129.4 111 61.3
Sed0015885 Sechium edule HOM05D000038 ORTHO05D006899 2.2e-28 129.4 115 58.3
Sabra18G0061900 Salix brachista HOM05D000038 ORTHO05D006899 2.9e-28 129.0 111 64.9
Duzib150G0983 Durio zibethinus HOM05D000038 ORTHO05D006899 3.8e-28 128.6 111 63.1
FAN19G2629 Fragaria x ananassa HOM05D000038 ORTHO05D006899 3.8e-28 128.6 111 63.1
Potri.018G070800 Populus trichocarpa HOM05D000038 ORTHO05D006899 4.9e-28 128.3 111 64.9
TPR.G10687 Trifolium pratense HOM05D000038 ORTHO05D006899 4.9e-28 128.3 115 61.7
Phvul.003G161500 Phaseolus vulgaris HOM05D000038 ORTHO05D006899 8.4e-28 127.5 111 61.3
FAN26G0623 Fragaria x ananassa HOM05D000038 ORTHO05D006899 1.1e-27 127.1 111 62.2
Duzib168G1995 Durio zibethinus HOM05D000038 ORTHO05D006899 1.4e-27 126.7 111 64.0
Prupe.7G238400 Prunus persica HOM05D000038 ORTHO05D006899 1.9e-27 126.3 141 53.9
Glyma.06G215600 Glycine max HOM05D000038 ORTHO05D006899 4.1e-27 125.2 111 57.7
Medtr2g054870 Medicago truncatula HOM05D000038 ORTHO05D006899 5.4e-27 124.8 111 59.5
Psat4g041200 Pisum sativum HOM05D000038 ORTHO05D006899 5.4e-27 124.8 110 60.0
VMungo1215G1681 Vigna mungo HOM05D000038 ORTHO05D006899 5.4e-27 124.8 111 59.5
arahy.Tifrunner.gnm1.ann1.CNV9AJ Arachis hypogaea HOM05D000038 ORTHO05D006899 7.1e-27 124.4 100 62.0
VMungo1309G2450 Vigna mungo HOM05D000038 ORTHO05D006899 7.1e-27 124.4 111 58.6
Phvul.009G198800 Phaseolus vulgaris HOM05D000038 ORTHO05D006899 9.2e-27 124.0 111 58.6
Nitab4.5_0004238g0030 Nicotiana tabacum HOM05D000038 ORTHO05D006899 2.1e-26 122.9 111 56.8
CsaV3_1G029750 Cucumis sativus L. HOM05D000038 ORTHO05D006899 3.5e-26 122.1 115 59.1
Glyma.04G149800 Glycine max HOM05D000038 ORTHO05D006899 3.5e-26 122.1 111 57.7
FAN23G2877 Fragaria x ananassa HOM05D000038 ORTHO05D006899 4.6e-26 121.7 111 60.4
Lalb_Chr12g0197761 Lupinus albus HOM05D000038 ORTHO05D006899 4.6e-26 121.7 111 60.4
Actinidia22011 Actinidia chinensis HOM05D000038 ORTHO05D006899 6.0e-26 121.3 111 58.6
MELO3C026637.2 Cucumis melo HOM05D000038 ORTHO05D006899 7.8e-26 120.9 115 59.1
Nitab4.5_0000295g0120 Nicotiana tabacum HOM05D000038 ORTHO05D006899 7.8e-26 120.9 111 55.9
PGSC0003DMG400021993 Solanum tuberosum HOM05D000038 ORTHO05D006899 2.3e-25 119.4 111 55.9
ClCG06G010840 Citrullus lanatus HOM05D000038 ORTHO05D006899 3.0e-25 119.0 115 59.1
Migut.J01185 Erythranthe guttata HOM05D000038 ORTHO05D006899 3.0e-25 119.0 111 56.8
Peaxi162Scf00115g00111 Petunia axillaris HOM05D000038 ORTHO05D006899 3.0e-25 119.0 111 57.7
Hma1.2p1_2820F.1_g329020 Hydrangea macrophylla HOM05D000038 ORTHO05D006899 3.9e-25 118.6 111 58.6
HanXRQChr06g0179871 Helianthus annuus HOM05D000038 ORTHO05D006899 6.6e-25 117.9 111 58.6
Lsat_1_v5_gn_8_57280 Lactuca sativa HOM05D000038 ORTHO05D006899 1.5e-24 116.7 111 57.7
Solyc06g008890.4 Solanum lycopersicum HOM05D000038 ORTHO05D006899 1.5e-24 116.7 111 56.8
Sopen06g003640 Solanum pennellii HOM05D000038 ORTHO05D006899 1.5e-24 116.7 111 56.8
Glyma.17G117800 Glycine max HOM05D000038 ORTHO05D006899 1.9e-24 116.3 111 56.8
Lj4C470T1 Lonicera japonica HOM05D000038 ORTHO05D006899 1.9e-24 116.3 111 55.0
SalBow6G2344 Salvia bowleyana HOM05D000038 ORTHO05D006899 1.9e-24 116.3 111 60.4
Ca_12334_v3 Cicer arietinum L. HOM05D000038 ORTHO05D006899 3.3e-24 115.5 111 55.9
Lsat_1_v5_gn_7_42521 Lactuca sativa HOM05D001262 ORTHO05D006899 9.6e-24 114.0 115 55.7
TPR.G11765 Trifolium pratense HOM05D000038 ORTHO05D006899 1.2e-23 113.6 111 54.1
CAN.G1006.21 Capsicum annuum HOM05D000038 ORTHO05D006899 1.6e-23 113.2 112 54.5
Peaxi162Scf00256g00063 Petunia axillaris HOM05D000038 ORTHO05D006899 1.6e-23 113.2 111 55.9
Sed0013426 Sechium edule HOM05D000038 ORTHO05D006899 2.8e-23 112.5 115 56.5
Rhsim01G0078200 Rhododendron simsii HOM05D000038 ORTHO05D006899 4.7e-23 111.7 115 55.7
SGA_v2.0_scaffold45G17078 Striga asiatica HOM05D000038 ORTHO05D006899 9.0e-22 107.5 144 47.9
HanXRQChr16g0501361 Helianthus annuus HOM05D000038 ORTHO05D006899 1.5e-21 106.7 111 54.1
Rhsim01G0077700 Rhododendron simsii HOM05D000038 ORTHO05D006899 5.8e-21 104.8 144 50.0
Psat1g026720 Pisum sativum HOM05D000038 ORTHO05D006899 9.9e-21 104.0 111 52.3
Nn8g39372 Nelumbo nucifera HOM05D000038 ORTHO05D006899 1.7e-20 103.2 111 49.5
TAR626G1748 Trochodendron aralioides HOM05D000038 ORTHO05D006899 2.2e-20 102.8 111 55.0
Aqoxy7G02072_Aqoxy7G02073 Aquilegia oxysepala HOM05D000038 ORTHO05D006899 3.8e-20 102.1 111 52.3
vmacro20653 Vaccinium macrocarpon HOM05D000038 ORTHO05D006899 4.9e-20 101.7 144 45.1
Rhsim01G0077800 Rhododendron simsii HOM05D000038 ORTHO05D006899 7.1e-19 97.8 115 53.0
Nn1g05446 Nelumbo nucifera HOM05D000038 ORTHO05D006899 3.9e-17 92.0 111 44.1
Nn2g11939 Nelumbo nucifera HOM05D000038 ORTHO05D006899 3.3e-16 89.0 147 44.9
BolC2t07006H Brassica oleracea HOM05D000038 ORTHO05D006899 6.2e-15 84.7 77 72.7
Rhsim01G0078100 Rhododendron simsii HOM05D000038 ORTHO05D006899 6.2e-15 84.7 112 47.3
MBI04_g10413_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D006899 1.4e-14 83.6 112 42.9
ATR0815G063 Amborella trichopoda HOM05D000038 ORTHO05D006899 2.9e-12 75.9 110 36.4
Ah.09g225640 Amaranthus hybridus HOM05D000038 ORTHO05D006899 9.3e-11 70.9 115 40.9
CiPaw.03G240300 Carya illinoinensis HOM05D000038 ORTHO05D006899 4.6e-10 68.6 45 71.1
PSO170G1304 Papaver somniferum HOM05D000038 ORTHO05D006899 6.0e-10 68.2 114 43.0
ECA240G3224 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.9e-10 67.8 45 71.1
Sc14g0000260 Simmondsia chinensis HOM05D000038 ORTHO05D006899 7.9e-10 67.8 115 33.9
EL10Ac8g18596 Beta vulgaris HOM05D000038 ORTHO05D006899 1.5e-08 63.5 110 40.9
ECA236G1482 Erigeron canadensis HOM05D000038 ORTHO05D006899 1.5e-08 63.5 45 62.2
Zm00001eb377370 Zea mays HOM05D000038 ORTHO05D006899 4.8e-07 58.5 122 36.1
SEGI_18020 Sequoiadendron giganteum HOM05D000038 ORTHO05D006899 9.0e-06 54.3 41 56.1
HPP92_008656 Vanilla planifolia HOM05D000038 ORTHO05D006899 9.0e-06 54.3 121 34.7


User provided reference genes

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