Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 0.0e+00 1160.2 588 100.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 0.0e+00 1160.2 588 100.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.9e-305 1051.2 591 91.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.9e-305 1051.2 591 91.9
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 5.5e-251 870.9 602 77.4
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.5e-236 820.5 613 72.9
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.5e-235 817.8 588 73.8
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-234 814.7 588 73.5
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.5e-232 809.7 598 73.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-227 792.3 579 73.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.5e-227 791.2 579 73.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.7e-226 788.9 581 73.1
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 9.7e-224 780.4 665 65.0
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 4.5e-221 771.5 678 63.3
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.7e-216 754.6 688 62.2
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.6e-186 656.8 660 56.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 9.3e-150 534.6 302 84.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 5.3e-113 412.5 553 42.1
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.3e-111 407.9 476 46.8
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 3.8e-111 406.4 579 42.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.5e-111 405.2 557 42.5
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.1e-110 404.8 553 41.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 4.2e-110 402.9 550 41.5
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 5.5e-110 402.5 552 41.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 5.5e-110 402.5 569 41.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 7.2e-110 402.1 570 41.4
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 9.4e-110 401.7 547 42.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 9.4e-110 401.7 569 41.8
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.1e-109 400.6 520 43.5
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 4.7e-109 399.4 553 41.2
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 4.7e-109 399.4 579 41.8
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 7.9e-109 398.7 566 40.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 7.9e-109 398.7 399 51.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.0e-108 398.3 577 41.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.0e-108 398.3 560 40.7
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.0e-108 398.3 568 41.7
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.8e-108 397.5 550 40.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.3e-108 397.1 571 40.5
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.3e-108 397.1 398 50.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.3e-108 397.1 576 41.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.0e-108 396.7 479 42.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.0e-108 396.7 552 41.1
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.0e-108 396.7 583 38.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 5.1e-108 396.0 370 53.0
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 5.1e-108 396.0 561 40.1
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 6.7e-108 395.6 368 53.5
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 6.7e-108 395.6 552 41.5
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.8e-108 395.2 577 41.1
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 8.8e-108 395.2 446 45.7
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.5e-107 394.4 552 41.1
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-107 394.4 583 40.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.5e-107 394.4 570 40.9
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-107 394.0 589 39.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.6e-107 393.7 402 51.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 3.3e-107 393.3 556 41.5
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 3.3e-107 393.3 591 39.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.3e-106 391.3 565 39.3
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.3e-106 391.3 571 39.6
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.7e-106 391.0 568 41.0
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.7e-106 391.0 577 38.1
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.2e-106 390.6 385 51.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.8e-106 389.4 553 40.5
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.8e-106 389.4 552 40.6
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.2e-106 388.7 390 50.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-105 388.3 551 42.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-105 387.9 576 40.3
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.4e-105 387.9 523 42.8
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.8e-105 387.5 376 51.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.4e-105 387.1 576 41.5
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.4e-105 387.1 576 38.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.4e-105 387.1 565 38.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.1e-105 386.3 551 41.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 4.1e-105 386.3 346 54.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 5.3e-105 386.0 513 42.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 5.3e-105 386.0 531 41.6
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 7.0e-105 385.6 462 45.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.0e-105 385.6 412 49.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 9.1e-105 385.2 581 37.5
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.2e-104 384.8 563 39.8
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.0e-104 384.0 551 41.7
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.0e-104 384.0 347 53.6
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 2.0e-104 384.0 555 41.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.6e-104 383.6 552 40.4
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.6e-104 383.6 638 36.7
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 3.5e-104 383.3 582 38.0
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.5e-104 382.9 592 38.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 7.7e-104 382.1 581 37.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.0e-103 381.7 567 39.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.0e-103 381.7 551 39.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.3e-103 381.3 552 40.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.7e-103 380.9 596 37.8
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.9e-103 380.2 561 38.3
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.8e-103 379.8 353 53.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 3.8e-103 379.8 373 51.5
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 5.0e-103 379.4 535 43.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 8.5e-103 378.6 554 40.4
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.1e-102 378.3 439 45.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.5e-102 375.9 564 40.2
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.1e-101 374.0 552 39.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 6.1e-101 372.5 561 39.8
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.0e-101 372.1 564 40.8
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.4e-100 371.3 356 50.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.8e-100 370.9 356 50.8
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.8e-100 370.9 356 50.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.8e-100 370.9 529 40.8
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.3e-100 370.5 356 50.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.2e-100 369.4 374 50.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.2e-100 369.4 357 51.0
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 6.7e-100 369.0 356 50.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.7e-100 369.0 553 39.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.4e-99 366.3 370 50.3
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 9.7e-99 365.2 346 49.4
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.3e-98 364.8 442 44.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.3e-98 364.8 449 43.0
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.8e-98 363.6 364 50.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.4e-97 361.3 462 43.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.3e-97 359.4 301 56.5
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 7.0e-97 359.0 364 47.8
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.0e-96 357.5 366 47.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.0e-96 357.5 637 35.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 3.5e-96 356.7 553 38.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 3.2e-94 350.1 551 39.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.6e-93 347.8 268 60.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.7e-93 346.3 367 49.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.0e-91 340.9 372 48.4
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 7.5e-91 339.0 338 49.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 9.8e-91 338.6 369 45.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.7e-90 336.7 571 37.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.7e-90 336.7 348 48.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 8.3e-90 335.5 300 53.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.4e-89 334.0 353 48.2
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.1e-89 333.6 455 40.2
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.9e-88 329.3 279 54.5
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.0e-84 316.6 319 48.3
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 8.8e-84 315.5 436 43.1
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 2.6e-83 313.9 591 35.9
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.3e-82 311.6 578 34.8
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.2e-82 310.8 245 57.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 4.9e-82 309.7 324 46.6
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.8e-81 307.8 318 48.1
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 8.0e-77 292.4 497 35.6
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.4e-73 281.6 223 57.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.5e-72 276.9 567 34.0
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 7.8e-72 275.8 472 36.7
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.6e-70 269.6 207 61.8
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.1e-69 267.7 207 62.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.4e-68 265.0 450 36.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.7e-66 256.9 308 42.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.4e-66 256.1 477 33.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 3.2e-65 253.8 207 58.0
CARHR192930 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.2e-58 231.1 390 44.6
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.9e-58 229.9 335 38.5
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.7e-55 221.5 445 31.0
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.9e-41 174.9 132 62.9
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.5e-38 164.5 163 50.9
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.6e-35 154.5 130 60.8
A02p40140 Brassica napus HOM05D003971 ORTHO05D101795 2.2e-34 151.4 123 74.0
A07p30930 Brassica napus HOM05D003971 ORTHO05D097208 2.2e-34 151.4 123 74.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.9e-34 151.0 248 36.3
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.8e-34 150.6 101 74.3
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.3e-30 137.5 103 63.1
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.8e-28 131.7 141 43.3
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.3e-28 130.2 80 77.5
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.3e-21 109.0 362 29.0
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 3.7e-21 107.5 67 74.6
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.8e-20 105.1 78 55.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 5.3e-20 103.6 65 75.4
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 8.4e-18 96.3 126 40.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.1e-16 91.7 323 26.3
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.3e-13 80.1 116 37.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 4.1e-12 77.4 96 42.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.3e-07 61.6 94 36.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.9e-06 58.5 316 23.1


User provided reference genes

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