Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-118 429.5 319 100.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 8.7e-118 427.6 319 99.4
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 9.0e-115 417.5 319 96.9
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.9e-113 411.8 319 89.3
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-108 397.1 319 87.1
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.6e-108 395.6 319 87.8
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 4.8e-108 395.2 319 86.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 8.1e-108 394.4 319 87.5
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-107 394.0 319 86.8
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.4e-107 393.7 319 92.5
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 5.8e-106 388.3 319 86.2
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 5.8e-106 388.3 319 86.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 6.4e-105 384.8 319 86.2
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.1e-103 379.8 318 85.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.3e-100 370.5 318 84.3
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 4.0e-99 365.5 318 83.6
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 4.3e-93 345.5 319 85.0
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-91 340.1 293 84.3
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.7e-89 333.6 319 74.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 7.2e-88 328.2 317 74.8
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.3e-88 327.8 316 81.6
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-87 327.4 316 82.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-87 327.4 316 82.0
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 1.6e-87 327.0 316 82.3
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-86 323.9 316 81.6
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.3e-86 323.2 237 85.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 4.3e-85 318.9 319 80.6
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.6e-84 317.0 316 79.1
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.8e-84 316.2 318 76.4
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 3.7e-84 315.8 320 80.6
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 4.8e-84 315.5 316 75.0
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 6.3e-84 315.1 318 66.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.4e-83 313.2 311 74.9
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.1e-83 312.4 319 71.5
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 4.5e-82 308.9 320 79.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.9e-82 308.5 320 78.1
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.2e-81 306.6 314 68.8
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.8e-81 305.8 314 79.0
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 2.5e-80 303.1 318 69.5
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.5e-80 303.1 320 75.9
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.2e-80 302.4 320 73.8
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 4.2e-80 302.4 319 77.7
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 4.2e-80 302.4 319 63.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 5.5e-80 302.0 316 74.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 9.4e-80 301.2 311 74.6
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.6e-79 300.4 316 70.3
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.1e-79 300.1 318 69.8
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.4e-78 297.4 321 68.5
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.8e-78 297.0 318 73.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.8e-78 297.0 311 76.8
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.3e-78 296.6 319 68.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 3.9e-78 295.8 318 69.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 5.1e-78 295.4 311 70.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 6.7e-78 295.0 291 83.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.1e-77 294.3 319 69.3
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.0e-77 293.5 316 77.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 2.5e-77 293.1 316 76.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.5e-77 293.1 316 68.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.3e-77 292.7 315 69.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 4.3e-77 292.4 319 75.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 5.7e-77 292.0 319 75.9
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.7e-77 292.0 311 76.5
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.7e-77 292.0 317 75.7
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 5.7e-77 292.0 322 60.9
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 7.4e-77 291.6 320 71.6
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 9.7e-77 291.2 315 68.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.3e-76 290.8 316 67.4
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.7e-76 290.4 311 71.1
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.7e-76 290.4 320 74.7
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 8.2e-76 288.1 319 64.6
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-75 287.7 216 83.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.4e-75 287.3 314 66.9
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.4e-75 287.3 314 66.9
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.4e-75 286.6 303 71.6
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.4e-75 286.6 315 76.2
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 3.1e-75 286.2 311 74.3
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 3.1e-75 286.2 318 76.1
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.1e-75 286.2 319 70.5
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 4.1e-75 285.8 217 78.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 9.1e-75 284.6 315 75.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.2e-74 284.3 317 72.6
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.5e-74 283.9 318 63.2
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 3.4e-74 282.7 318 74.2
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.9e-74 282.0 310 69.7
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 7.7e-74 281.6 218 91.3
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 7.7e-74 281.6 318 73.9
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-73 280.8 320 70.0
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.7e-73 280.4 318 63.8
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 2.2e-73 280.0 316 74.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.9e-73 279.6 315 72.7
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.5e-72 276.6 296 77.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.2e-72 276.2 346 56.6
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 3.2e-72 276.2 318 67.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 9.4e-72 274.6 318 73.0
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.2e-71 274.2 291 81.8
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.6e-71 273.9 327 64.5
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.1e-71 273.5 327 65.7
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.6e-71 272.7 315 61.6
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.6e-71 272.7 315 61.6
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 4.7e-71 272.3 296 79.1
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.4e-70 270.8 293 79.5
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.4e-70 270.8 318 66.7
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-70 269.6 175 92.6
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.1e-70 268.9 312 75.0
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 5.1e-70 268.9 310 73.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-69 266.5 175 90.9
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-68 262.7 174 79.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.7e-68 262.7 287 79.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-68 262.3 174 79.9
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.4e-67 260.8 310 60.3
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.1e-67 259.2 289 71.6
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.8e-65 252.7 319 69.6
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.0e-65 252.3 174 85.6
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 6.5e-65 251.9 238 71.0
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.1e-63 246.9 310 66.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.6e-63 246.1 316 59.8
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.8e-62 243.8 301 68.4
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 7.5e-61 238.4 140 91.4
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.7e-60 236.1 187 92.0
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.8e-59 233.8 159 78.6
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.4e-59 233.4 345 51.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.1e-56 224.6 313 55.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 3.6e-55 219.5 318 56.0
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-53 213.4 229 79.9
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 5.7e-53 212.2 293 60.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 5.7e-53 212.2 309 60.5
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-53 211.8 186 72.6
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-52 211.1 150 78.0
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 2.4e-51 206.8 317 58.7
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 7.7e-50 201.8 218 63.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-49 201.4 113 92.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.3e-49 201.1 316 63.3
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.7e-49 200.7 315 53.3
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 5.2e-46 189.1 296 60.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-43 179.9 152 74.3
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-41 174.1 158 74.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 6.6e-41 172.2 308 49.0
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 8.6e-41 171.8 150 63.3
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-39 167.9 119 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.8e-38 164.1 315 45.7
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.3e-38 163.7 212 79.7
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 4.4e-37 159.5 152 75.7
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 4.4e-37 159.5 313 54.3
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-36 157.9 157 61.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 6.4e-36 155.6 151 58.3
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.3e-33 147.1 207 72.9
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.2e-31 141.4 308 43.2
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 8.0e-31 138.7 153 55.6
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.1e-30 136.7 156 59.0
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.8e-26 122.1 181 74.0
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-22 110.5 96 64.6
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-22 110.2 84 69.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-21 108.2 84 67.9
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-21 108.2 84 67.9
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-20 104.0 102 60.8
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.1e-19 99.8 77 68.8
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 4.6e-18 96.3 144 41.7
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.7e-17 94.4 96 54.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-16 90.5 77 63.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-13 81.3 67 67.2
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 3.4e-13 80.1 67 67.2
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 7.6e-13 79.0 152 38.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 6.4e-12 75.9 162 58.6
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.9e-09 66.6 106 43.4
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.6e-09 65.5 62 59.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.1e-08 65.1 47 66.0
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 3.6e-07 60.1 56 55.4


User provided reference genes

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