Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 5.6e-164 580.9 293 100.0
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 2.4e-159 565.5 319 91.5
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.9e-148 529.3 297 91.2
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 4.2e-143 511.5 288 91.0
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 2.2e-139 499.2 299 85.6
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 1.2e-137 493.4 299 84.9
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 7.7e-137 490.7 298 84.2
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 2.9e-136 488.8 299 84.3
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 5.0e-136 488.0 297 84.2
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.1e-135 486.9 298 83.9
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.1e-135 486.9 298 83.9
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 4.2e-135 485.0 300 83.0
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.1e-134 482.6 297 82.5
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.3e-131 473.4 300 80.7
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 9.1e-130 467.2 298 80.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 1.8e-122 443.0 295 77.6
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 2.0e-100 369.8 312 63.5
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.0e-89 333.2 177 88.7
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 5.9e-89 331.6 298 61.1
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 6.6e-88 328.2 293 60.1
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 4.3e-87 325.5 293 59.4
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 7.3e-87 324.7 298 58.7
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.8e-85 320.1 291 59.1
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 1.8e-85 320.1 313 56.9
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 1.2e-84 317.4 293 58.0
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.5e-84 317.0 290 56.2
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 4.4e-84 315.5 229 66.8
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 4.4e-84 315.5 229 66.8
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 4.4e-84 315.5 252 61.9
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 1.3e-83 313.9 226 66.4
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.2e-83 313.2 321 55.1
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 3.7e-83 312.4 299 57.5
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 6.4e-83 311.6 232 65.1
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 6.4e-83 311.6 292 58.2
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 8.3e-83 311.2 282 57.8
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.1e-82 310.8 295 56.3
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.1e-82 310.8 284 57.7
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.1e-82 310.8 242 64.0
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 1.9e-82 310.1 273 59.7
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 3.2e-82 309.3 226 66.4
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 4.1e-82 308.9 301 56.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 5.4e-82 308.5 228 66.7
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 7.0e-82 308.1 227 65.6
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 7.0e-82 308.1 230 66.5
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 9.2e-82 307.8 289 57.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 9.2e-82 307.8 279 56.3
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 9.2e-82 307.8 242 63.6
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.2e-81 307.4 291 57.0
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.6e-81 307.0 221 66.5
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.6e-81 307.0 275 58.2
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.6e-81 307.0 240 62.5
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 2.0e-81 306.6 232 65.1
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.7e-81 306.2 230 66.1
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 3.5e-81 305.8 223 65.5
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 3.5e-81 305.8 297 55.6
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 4.6e-81 305.4 246 62.2
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 6.0e-81 305.1 312 53.8
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 6.0e-81 305.1 221 67.4
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.0e-80 304.3 286 57.0
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.0e-80 304.3 226 65.9
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.3e-80 303.9 300 55.3
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.7e-80 303.5 300 55.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 2.3e-80 303.1 227 64.8
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.9e-80 302.4 225 64.9
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 6.6e-80 301.6 235 65.1
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 6.6e-80 301.6 283 54.8
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 8.6e-80 301.2 228 63.6
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.5e-79 300.4 229 64.2
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 1.5e-79 300.4 281 55.9
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.9e-79 300.1 283 54.1
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 2.5e-79 299.7 221 65.2
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 3.3e-79 299.3 225 65.8
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 3.3e-79 299.3 301 55.8
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 7.3e-79 298.1 226 64.2
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 9.5e-79 297.7 220 65.9
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.6e-78 297.0 220 65.0
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 2.1e-78 296.6 335 51.0
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.6e-78 295.8 300 54.7
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.8e-77 293.5 284 57.0
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.8e-77 293.5 346 48.8
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 3.1e-77 292.7 229 62.4
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 5.2e-77 292.0 226 63.3
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 6.8e-77 291.6 271 56.5
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 6.8e-77 291.6 302 55.0
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 8.9e-77 291.2 248 58.1
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 3.4e-76 289.3 335 49.6
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 9.8e-76 287.7 224 62.9
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 2.2e-75 286.6 222 62.6
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 3.7e-75 285.8 209 64.1
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 5.4e-74 282.0 290 53.8
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 3.5e-73 279.3 294 53.1
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.7e-72 276.9 239 57.7
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 3.0e-72 276.2 201 64.2
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 5.1e-72 275.4 266 55.6
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 5.6e-71 271.9 269 55.8
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 4.0e-69 265.8 274 53.3
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 4.9e-67 258.8 292 49.0
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 6.4e-67 258.5 240 54.2
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 5.4e-66 255.4 182 65.9
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.2e-65 254.2 199 63.8
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.0e-64 251.1 210 60.5
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.7e-64 250.4 225 57.3
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.6e-62 243.8 182 65.4
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 6.4e-59 231.9 227 53.3
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.0e-56 224.6 219 53.9
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.3e-56 224.2 151 70.9
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.1e-53 214.5 151 66.9
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 2.4e-50 203.4 221 55.2
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 9.3e-50 201.4 219 54.8
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 3.0e-48 196.4 143 66.4
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.1e-47 194.5 153 60.1
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 4.3e-47 192.6 149 64.4
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.2e-43 180.3 144 62.5
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 4.9e-43 179.1 158 58.9
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.6e-38 164.1 169 53.8
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.7e-31 139.0 147 50.3
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 1.3e-30 137.9 180 37.2
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.8e-30 136.7 198 37.9
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 2.5e-26 123.6 248 37.1
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 7.9e-17 92.0 68 63.2
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.2e-12 78.2 136 35.3
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.6e-09 67.8 102 41.2
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 1.4e-08 64.7 147 32.7
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 6.7e-08 62.4 36 72.2
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 2.0e-07 60.8 101 34.7
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 4.4e-07 59.7 95 35.8
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 4.4e-07 59.7 101 32.7
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 1.7e-06 57.8 121 28.9
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 1.7e-06 57.8 105 34.3
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 2.2e-06 57.4 155 27.1
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 2.2e-06 57.4 101 31.7
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 2.2e-06 57.4 118 33.9
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 3.7e-06 56.6 100 30.0
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 4.8e-06 56.2 106 30.2
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 4.8e-06 56.2 106 31.1
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 4.8e-06 56.2 102 31.4
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 4.8e-06 56.2 97 32.0
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 4.8e-06 56.2 101 31.7
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 4.8e-06 56.2 99 31.3
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 6.3e-06 55.8 105 35.2
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.3e-06 55.8 101 32.7
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 6.3e-06 55.8 101 33.7
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 6.3e-06 55.8 93 36.6
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 8.2e-06 55.5 98 32.7


User provided reference genes

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