Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 2.2e-224 781.9 388 100.0
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 3.2e-106 389.4 449 55.2
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 5.1e-104 382.1 464 54.5
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 1.5e-92 344.0 426 52.3
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 3.8e-91 339.3 441 50.8
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 1.4e-85 320.9 435 48.7
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 2.7e-81 306.6 454 48.7
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 1.6e-78 297.4 423 50.1
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 6.2e-78 295.4 460 46.1
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 4.9e-75 285.8 423 49.4
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 4.5e-68 262.7 494 42.7
C02p09870 Brassica napus HOM05D006718 ORTHO05D008492 1.6e-65 254.2 211 69.7
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 2.1e-65 253.8 459 45.5
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 1.0e-64 251.5 423 46.1
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 4.4e-55 219.5 413 39.5
BolC2t06894H Brassica oleracea HOM05D006718 ORTHO05D008492 2.6e-52 210.3 190 64.7
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.0e-47 194.1 542 33.8
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 3.4e-39 166.8 255 45.1
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 2.7e-36 157.1 161 56.5
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 2.7e-28 130.6 415 32.8
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 3.3e-26 123.6 318 34.6
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 1.4e-24 118.2 364 34.3
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 2.0e-23 114.4 264 35.6
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 7.5e-23 112.5 373 32.4
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 6.3e-22 109.4 414 30.7
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 6.3e-22 109.4 325 33.8
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 9.2e-21 105.5 406 31.8
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.6e-20 104.8 459 27.5
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 3.5e-20 103.6 431 32.3
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 4.6e-20 103.2 429 30.5
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 7.8e-20 102.4 402 29.1
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 7.8e-20 102.4 382 30.9
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 7.8e-20 102.4 295 35.6
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.0e-19 102.1 379 30.6
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 2.3e-19 100.9 241 33.2
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 2.3e-19 100.9 401 31.7
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 8.6e-19 99.0 383 31.1
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 1.1e-18 98.6 427 30.4
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 3.3e-18 97.1 400 30.0
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 3.3e-18 97.1 315 31.1
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 4.3e-18 96.7 250 33.2
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 4.3e-18 96.7 316 30.1
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 1.2e-17 95.1 389 29.6
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 1.6e-17 94.7 438 29.0
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.8e-17 94.0 382 30.1
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 4.7e-17 93.2 404 28.5
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 6.1e-17 92.8 382 30.1
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 1.0e-16 92.0 389 31.1
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 1.8e-16 91.3 418 29.4
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 1.8e-16 91.3 270 33.0
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 2.3e-16 90.9 391 29.7
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 3.1e-16 90.5 452 29.2
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 4.0e-16 90.1 256 32.4
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 6.8e-16 89.4 372 31.7
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 2.6e-15 87.4 331 30.2
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 5.8e-15 86.3 280 30.4
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 2.9e-14 84.0 372 27.7
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 2.9e-14 84.0 380 29.5
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 3.7e-14 83.6 410 26.1
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 3.7e-14 83.6 424 28.1
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 4.9e-14 83.2 401 27.7
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 8.3e-14 82.4 178 35.4
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 1.4e-13 81.6 312 30.1
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 1.9e-13 81.3 429 27.0
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 1.9e-13 81.3 214 32.2
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 2.4e-13 80.9 369 27.9
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.4e-13 80.9 348 29.6
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 3.2e-13 80.5 389 29.3
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 3.2e-13 80.5 388 26.3
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 4.1e-13 80.1 425 28.0
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 7.0e-13 79.3 290 29.0
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 7.0e-13 79.3 328 28.7
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 9.2e-13 79.0 355 28.5
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 9.2e-13 79.0 349 28.7
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 1.2e-12 78.6 425 28.0
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.2e-12 78.6 420 28.6
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 1.6e-12 78.2 344 29.4
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 2.0e-12 77.8 321 28.0
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 6.0e-12 76.3 161 33.5
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 6.0e-12 76.3 393 27.0
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 1.3e-11 75.1 394 26.6
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.7e-11 74.7 380 27.4
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 3.0e-11 73.9 400 26.5
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 3.9e-11 73.6 432 25.9
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 8.6e-11 72.4 347 29.7
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 8.6e-11 72.4 445 27.0
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 1.1e-10 72.0 427 26.9
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 4.3e-10 70.1 59 57.6
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 9.5e-10 68.9 453 23.8
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 3.6e-09 67.0 422 27.3
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 3.6e-09 67.0 190 30.5
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 8.1e-09 65.9 448 26.8
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 1.1e-08 65.5 214 30.4
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 1.1e-08 65.5 173 31.2
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 1.8e-08 64.7 167 31.7
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 4.0e-08 63.5 452 24.1
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 4.0e-08 63.5 198 28.8
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 1.2e-07 62.0 251 25.9
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 4.4e-07 60.1 110 41.8
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 7.5e-07 59.3 163 32.5
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 7.5e-07 59.3 279 29.0


User provided reference genes

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