Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.4e-290 1002.3 519 100.0
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 2.4e-274 948.3 516 96.1
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 7.1e-271 936.8 520 94.6
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 2.2e-267 925.2 513 94.5
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 2.1e-262 908.7 509 94.5
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.4e-234 815.5 520 86.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.2e-222 776.5 512 79.9
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 2.7e-217 758.8 515 77.9
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.1e-198 696.0 544 71.5
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 8.4e-195 684.1 517 73.5
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 3.2e-194 682.2 516 73.3
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 2.0e-180 636.3 511 68.7
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 9.0e-157 557.8 520 59.8
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 1.2e-121 441.0 532 48.9
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 7.0e-117 425.2 522 46.6
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.7e-115 420.6 522 46.7
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 3.8e-115 419.5 523 47.2
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 6.5e-115 418.7 534 45.9
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 1.5e-114 417.5 524 46.9
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 3.6e-113 412.9 532 46.1
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 5.7e-111 405.6 526 46.6
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 8.3e-110 401.7 531 44.3
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 8.3e-110 401.7 535 43.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 1.4e-109 401.0 523 45.3
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.9e-106 390.6 486 46.9
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 9.5e-106 388.3 544 44.5
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.8e-105 386.7 516 44.6
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 4.0e-104 382.9 481 46.6
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 3.4e-103 379.8 526 43.0
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 5.7e-103 379.0 524 43.9
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 7.0e-101 372.1 527 43.6
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 2.7e-100 370.2 524 44.3
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 7.8e-100 368.6 522 44.3
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 3.0e-99 366.7 523 44.6
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.9e-99 366.3 524 44.1
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.6e-99 365.5 524 44.3
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 1.1e-98 364.8 531 42.7
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 2.5e-98 363.6 522 44.3
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 3.3e-98 363.2 524 44.5
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 9.5e-98 361.7 517 44.9
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 6.2e-97 359.0 527 43.1
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 8.0e-97 358.6 523 44.7
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 1.0e-96 358.2 475 46.3
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.0e-96 358.2 522 43.9
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 6.8e-96 355.5 535 42.4
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 1.5e-95 354.4 519 41.6
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 4.4e-95 352.8 524 44.3
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 3.7e-94 349.7 524 43.1
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 4.9e-94 349.4 521 41.1
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.1e-93 348.2 528 41.3
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 4.1e-93 346.3 654 37.3
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 7.0e-93 345.5 526 40.7
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 9.2e-93 345.1 518 40.5
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.8e-92 342.0 488 43.6
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 3.0e-91 340.1 519 42.2
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 6.6e-91 339.0 516 40.9
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 8.6e-91 338.6 536 45.0
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 1.9e-90 337.4 525 40.8
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 8.9e-88 328.6 526 39.5
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.1e-85 321.6 520 41.2
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 1.3e-83 314.7 518 41.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 3.9e-83 313.2 353 50.1
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 5.1e-83 312.8 500 39.8
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.5e-82 311.2 515 38.8
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.9e-82 310.8 475 41.3
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.7e-81 306.2 527 39.5
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 4.7e-81 306.2 519 39.7
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.1e-80 305.1 516 37.0
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 4.4e-79 299.7 422 41.9
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 3.2e-77 293.5 484 42.8
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 2.1e-76 290.8 523 36.1
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 1.3e-75 288.1 544 35.5
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 4.3e-74 283.1 458 42.8
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 8.1e-73 278.9 266 62.8
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 3.1e-72 276.9 530 37.5
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.8e-70 270.0 519 36.2
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 3.2e-69 266.9 458 41.9
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 2.1e-68 264.2 530 37.5
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 1.7e-67 261.2 501 37.3
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 1.9e-66 257.7 688 32.0
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 1.6e-65 254.6 419 41.3
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 5.3e-64 249.6 380 38.9
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 5.8e-63 246.1 427 38.2
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 3.8e-62 243.4 376 38.8
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 1.1e-61 241.9 267 51.3
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 3.0e-59 233.8 459 35.3
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 6.7e-59 232.6 427 38.2
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 4.5e-55 219.9 273 48.4
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 4.9e-54 216.5 536 28.9
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 2.1e-52 211.1 306 43.1
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 3.9e-43 180.3 144 81.2
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 2.1e-41 174.5 555 28.1
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.4e-40 171.8 217 44.2
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.8e-40 171.4 357 35.6
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 5.3e-40 169.9 137 81.8
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 2.6e-39 167.5 140 72.9
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 2.6e-39 167.5 140 72.9
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 2.5e-37 161.0 290 36.6
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 3.2e-37 160.6 453 28.9
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 7.2e-37 159.5 117 76.9
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 7.2e-37 159.5 117 76.9
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 7.2e-37 159.5 117 76.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 7.9e-36 156.0 338 34.9
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.0e-35 155.6 315 35.2
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 6.3e-33 146.4 162 48.8
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.1e-32 144.1 141 51.8
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 1.2e-31 142.1 130 54.6
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 4.5e-31 140.2 146 51.4
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 1.9e-29 134.8 291 36.4
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.8e-27 128.3 116 53.4
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 5.7e-26 123.2 474 25.3
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 4.8e-25 120.2 478 25.3
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 9.1e-24 115.9 147 52.4
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 4.5e-23 113.6 135 43.7
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.0e-22 112.5 252 31.3
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 8.5e-22 109.4 142 47.9
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 1.6e-20 105.1 135 45.9
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 4.7e-20 103.6 132 42.4
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 3.8e-14 84.0 162 34.0
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 3.0e-11 74.3 148 31.1
BcaB01g04934 Brassica carinata HOM05D005725 ORTHO05D093362 2.6e-10 71.2 72 59.7
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 5.7e-10 70.1 177 28.8
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 3.1e-08 64.3 95 41.1
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 3.1e-08 64.3 68 45.6
BraA09t40805Z Brassica rapa HOM05D005725 ORTHO05D007531 7.7e-07 59.7 73 67.1


User provided reference genes

Program Settings