Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 0.0e+00 1184.5 654 100.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 0.0e+00 1113.2 660 93.8
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-244 850.1 664 77.3
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 9.4e-244 847.0 689 75.9
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-242 842.0 664 76.4
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.7e-184 650.2 705 62.7
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-178 630.2 671 63.9
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-168 596.7 814 54.7
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-154 550.1 697 56.4
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-153 547.4 717 54.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.9e-152 543.1 704 55.8
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 5.3e-146 522.3 697 54.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 3.8e-144 516.2 695 54.8
C03p60050 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-142 509.6 508 66.3
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.4e-135 485.0 700 52.7
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.9e-121 439.1 694 49.7
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.3e-112 411.4 692 48.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 4.2e-111 406.4 701 48.1
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 6.4e-75 286.2 291 67.0
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-73 281.6 244 73.0
BcaC04g18830 Brassica carinata HOM05D004299 ORTHO05D032718 8.1e-62 242.7 520 42.3
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-61 241.5 168 84.5
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.8e-61 241.5 168 84.5
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.9e-58 231.5 181 76.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 7.1e-42 176.4 697 33.7
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 2.8e-38 164.5 701 30.8
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.4e-34 152.1 406 37.2
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.5e-33 147.5 424 36.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 8.7e-32 142.9 681 32.6
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 2.2e-30 138.3 233 45.9
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.8e-30 137.1 518 34.2
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-28 131.3 385 36.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-28 131.3 385 36.9
BolC9t58840H Brassica oleracea HOM05D004299 ORTHO05D032718 2.9e-27 127.9 280 39.3
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 5.0e-27 127.1 511 32.7
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.1e-26 125.9 663 29.1
C09p60050 Brassica napus HOM05D004299 ORTHO05D032718 9.4e-26 122.9 276 39.5
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-25 120.9 662 27.6
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.6e-25 120.9 662 27.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 8.8e-24 116.3 249 41.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 9.7e-23 112.8 233 39.1
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 4.8e-22 110.5 659 27.0
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.2e-20 105.9 727 26.4
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-20 104.8 95 70.5
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 2.6e-20 104.8 95 70.5
C03p09510 Brassica napus HOM05D004299 ORTHO05D024603 5.9e-20 103.6 84 71.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.3e-19 102.4 332 31.0
A10p22260 Brassica napus HOM05D004299 ORTHO05D024603 1.7e-19 102.1 86 70.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.8e-19 100.9 297 35.4
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 5.0e-19 100.5 251 35.1
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 5.0e-19 100.5 698 28.1
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.4e-18 99.0 269 35.3
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.5e-18 98.2 269 34.2
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.5e-18 97.1 729 26.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.2e-18 96.7 259 37.5
BraA10t44285Z Brassica rapa HOM05D004299 ORTHO05D024603 2.1e-17 95.1 86 67.4
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.1e-17 95.1 781 28.7
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 4.7e-17 94.0 76 63.2
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.7e-17 94.0 272 35.3
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.7e-17 94.0 272 34.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.4e-16 92.4 297 36.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.8e-16 92.0 302 31.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 3.0e-16 91.3 195 38.5
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 6.7e-16 90.1 275 32.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 8.8e-16 89.7 823 26.1
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.5e-15 89.0 715 25.3
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.3e-15 87.8 684 26.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 7.4e-15 86.7 716 26.1
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 7.4e-15 86.7 143 44.8
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 7.4e-15 86.7 297 32.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.3e-14 85.9 728 25.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.3e-14 85.9 683 26.1
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.7e-14 84.3 512 27.5
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.1e-13 82.8 285 32.3
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.4e-13 82.4 607 27.3
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.1e-13 81.3 361 30.2
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 4.1e-13 80.9 162 38.3
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 4.1e-13 80.9 764 25.7
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.2e-12 79.3 236 31.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-12 79.0 598 25.6
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.0e-12 78.6 238 35.3
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.6e-12 78.2 311 31.2
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 5.9e-12 77.0 642 27.3
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.0e-11 76.3 671 26.5
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-11 75.9 265 29.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.2e-11 75.1 693 26.7
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.0e-11 73.9 361 30.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 6.5e-11 73.6 456 27.0
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-10 72.8 302 30.1
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-10 72.8 768 25.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.9e-10 72.0 310 31.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 3.2e-10 71.2 373 29.5
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.2e-10 70.9 298 29.9
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.5e-10 70.5 695 26.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 7.2e-10 70.1 64 59.4
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 9.4e-10 69.7 509 26.7
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.6e-09 68.9 813 25.7
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.6e-09 68.9 346 27.5
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.1e-09 68.6 396 27.0
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 2.7e-09 68.2 330 29.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 3.6e-09 67.8 566 27.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.6e-09 67.8 545 25.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.1e-09 67.0 553 26.0
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 8.0e-09 66.6 77 48.1
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.0e-08 66.2 753 25.2
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.4e-08 65.9 266 32.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.4e-08 65.9 459 25.7
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.8e-08 65.5 404 27.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.9e-08 64.3 511 26.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 5.2e-08 63.9 689 24.7
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.1e-07 62.8 582 24.7
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.0e-07 62.0 39 76.9
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.0e-07 62.0 501 25.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 4.4e-07 60.8 713 26.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 7.4e-07 60.1 560 26.6
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.7e-06 58.9 78 39.7
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.7e-06 58.9 555 25.0
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 4.8e-06 57.4 38 68.4
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 4.8e-06 57.4 38 68.4
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 6.3e-06 57.0 594 25.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 6.3e-06 57.0 272 29.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 8.2e-06 56.6 714 25.1


User provided reference genes

Program Settings